Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC16.18■□□□□ 0.18
CCNA1P78396 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CCNA1P78396 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC16.18■□□□□ 0.18
CCNA1P78396 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CCNA1P78396 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CCNA1P78396 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC16.18■□□□□ 0.18
CCNA1P78396 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC16.18■□□□□ 0.18
CCNA1P78396 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC16.18■□□□□ 0.18
CCNA1P78396 AC063952.3-201ENST00000467756 308 ntBASIC16.18■□□□□ 0.18
CCNA1P78396 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC16.18■□□□□ 0.18
CCNA1P78396 AC022447.6-201ENST00000515522 438 ntBASIC16.18■□□□□ 0.18
CCNA1P78396 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC16.18■□□□□ 0.18
CCNA1P78396 MT2A-202ENST00000561491 581 ntTSL 2 BASIC16.18■□□□□ 0.18
CCNA1P78396 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 RN7SL455P-201ENST00000580629 282 ntBASIC16.18■□□□□ 0.18
CCNA1P78396 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC16.18■□□□□ 0.18
CCNA1P78396 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC16.18■□□□□ 0.18
CCNA1P78396 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.18■□□□□ 0.18
CCNA1P78396 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.18■□□□□ 0.18
CCNA1P78396 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CCNA1P78396 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CCNA1P78396 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC16.18■□□□□ 0.18
CCNA1P78396 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.18■□□□□ 0.18
CCNA1P78396 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCNA1P78396 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.17■□□□□ 0.18
CCNA1P78396 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
CCNA1P78396 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
CCNA1P78396 AL109809.1-201ENST00000418979 1367 ntBASIC16.17■□□□□ 0.18
CCNA1P78396 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.17■□□□□ 0.18
CCNA1P78396 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC16.17■□□□□ 0.18
CCNA1P78396 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC16.17■□□□□ 0.18
CCNA1P78396 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.17■□□□□ 0.18
CCNA1P78396 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC16.17■□□□□ 0.18
CCNA1P78396 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC16.17■□□□□ 0.18
CCNA1P78396 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC16.17■□□□□ 0.18
CCNA1P78396 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC16.17■□□□□ 0.18
CCNA1P78396 ALG1L3P-201ENST00000503331 765 ntBASIC16.17■□□□□ 0.18
CCNA1P78396 RPS23-207ENST00000511844 530 ntTSL 2 BASIC16.17■□□□□ 0.18
CCNA1P78396 AC100858.1-201ENST00000514059 1228 ntBASIC16.17■□□□□ 0.18
CCNA1P78396 TREHP1-201ENST00000531328 465 ntBASIC16.17■□□□□ 0.18
CCNA1P78396 BATF-202ENST00000555504 361 ntTSL 2 BASIC16.17■□□□□ 0.18
CCNA1P78396 AL118516.1-201ENST00000564152 670 ntBASIC16.17■□□□□ 0.18
CCNA1P78396 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC16.17■□□□□ 0.18
CCNA1P78396 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC16.17■□□□□ 0.18
CCNA1P78396 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC16.17■□□□□ 0.18
CCNA1P78396 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC16.17■□□□□ 0.18
CCNA1P78396 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
CCNA1P78396 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.17■□□□□ 0.18
CCNA1P78396 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 TCAF2P1-201ENST00000291129 2421 ntBASIC16.17■□□□□ 0.18
CCNA1P78396 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.17■□□□□ 0.18
CCNA1P78396 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 SHMT1P1-201ENST00000419974 1312 ntBASIC16.17■□□□□ 0.18
CCNA1P78396 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCNA1P78396 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCNA1P78396 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms