Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 USP17L6P-201ENST00000382470 1197 ntBASIC12.9□□□□□ -0.34
CLRN1P58418 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC12.9□□□□□ -0.34
CLRN1P58418 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC12.9□□□□□ -0.34
CLRN1P58418 OLR1-203ENST00000432556 950 ntTSL 2 BASIC12.9□□□□□ -0.34
CLRN1P58418 AL157407.1-201ENST00000435784 904 ntBASIC12.9□□□□□ -0.34
CLRN1P58418 AL645933.1-201ENST00000440087 609 ntBASIC12.9□□□□□ -0.34
CLRN1P58418 AC012441.2-201ENST00000444843 739 ntBASIC12.9□□□□□ -0.34
CLRN1P58418 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 HNRNPA1P36-201ENST00000521313 955 ntBASIC12.9□□□□□ -0.34
CLRN1P58418 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 IGHV3-71-201ENST00000523324 359 ntBASIC12.9□□□□□ -0.34
CLRN1P58418 RNF41-210ENST00000552244 716 ntTSL 3 BASIC12.9□□□□□ -0.34
CLRN1P58418 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
CLRN1P58418 DUX4L45-201ENST00000566406 1057 ntBASIC12.9□□□□□ -0.34
CLRN1P58418 AC021016.3-201ENST00000608367 477 ntBASIC12.9□□□□□ -0.34
CLRN1P58418 AC104506.1-201ENST00000609247 429 ntBASIC12.9□□□□□ -0.34
CLRN1P58418 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
CLRN1P58418 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC12.9□□□□□ -0.34
CLRN1P58418 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 TP73-211ENST00000604074 4806 ntTSL 5 BASIC12.9□□□□□ -0.34
CLRN1P58418 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
CLRN1P58418 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
CLRN1P58418 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
CLRN1P58418 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC12.9□□□□□ -0.34
CLRN1P58418 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC12.9□□□□□ -0.34
CLRN1P58418 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
CLRN1P58418 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CLRN1P58418 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
CLRN1P58418 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC12.89□□□□□ -0.35
CLRN1P58418 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CLRN1P58418 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC12.89□□□□□ -0.35
CLRN1P58418 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
CLRN1P58418 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC12.89□□□□□ -0.35
CLRN1P58418 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC12.89□□□□□ -0.35
CLRN1P58418 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
CLRN1P58418 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
CLRN1P58418 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC12.89□□□□□ -0.35
CLRN1P58418 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CLRN1P58418 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
CLRN1P58418 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC12.89□□□□□ -0.35
CLRN1P58418 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC12.89□□□□□ -0.35
CLRN1P58418 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC12.89□□□□□ -0.35
CLRN1P58418 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC12.89□□□□□ -0.35
CLRN1P58418 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC12.89□□□□□ -0.35
CLRN1P58418 ACR-203ENST00000529621 708 ntTSL 5 BASIC12.89□□□□□ -0.35
CLRN1P58418 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC12.89□□□□□ -0.35
CLRN1P58418 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC12.89□□□□□ -0.35
CLRN1P58418 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC12.89□□□□□ -0.35
CLRN1P58418 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
CLRN1P58418 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 AC005840.4-201ENST00000541242 2494 ntBASIC12.89□□□□□ -0.35
CLRN1P58418 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC12.89□□□□□ -0.35
CLRN1P58418 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
CLRN1P58418 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
CLRN1P58418 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC12.89□□□□□ -0.35
CLRN1P58418 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 BANP-203ENST00000393207 2438 ntTSL 2 BASIC12.89□□□□□ -0.35
CLRN1P58418 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC12.89□□□□□ -0.35
CLRN1P58418 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC12.89□□□□□ -0.35
CLRN1P58418 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
CLRN1P58418 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms