Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC15.26■□□□□ 0.03
LIG3P49916 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.26■□□□□ 0.03
LIG3P49916 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LIG3P49916 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LIG3P49916 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
LIG3P49916 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC15.26■□□□□ 0.03
LIG3P49916 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
LIG3P49916 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LIG3P49916 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
LIG3P49916 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC15.26■□□□□ 0.03
LIG3P49916 KRT8P14-201ENST00000414254 1442 ntBASIC15.26■□□□□ 0.03
LIG3P49916 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC15.25■□□□□ 0.03
LIG3P49916 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC15.25■□□□□ 0.03
LIG3P49916 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
LIG3P49916 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
LIG3P49916 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.25■□□□□ 0.03
LIG3P49916 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
LIG3P49916 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
LIG3P49916 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.25■□□□□ 0.03
LIG3P49916 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.25■□□□□ 0.03
LIG3P49916 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC15.25■□□□□ 0.03
LIG3P49916 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.25■□□□□ 0.03
LIG3P49916 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.25■□□□□ 0.03
LIG3P49916 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC15.25■□□□□ 0.03
LIG3P49916 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.25■□□□□ 0.03
LIG3P49916 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
LIG3P49916 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.25■□□□□ 0.03
LIG3P49916 Six3os1_5.1-201ENST00000611000 271 ntBASIC15.25■□□□□ 0.03
LIG3P49916 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.25■□□□□ 0.03
LIG3P49916 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.25■□□□□ 0.03
LIG3P49916 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
LIG3P49916 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC15.25■□□□□ 0.03
LIG3P49916 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
LIG3P49916 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
LIG3P49916 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC15.25■□□□□ 0.03
LIG3P49916 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
LIG3P49916 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.25■□□□□ 0.03
LIG3P49916 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.25■□□□□ 0.03
LIG3P49916 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.25■□□□□ 0.03
LIG3P49916 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.25■□□□□ 0.03
LIG3P49916 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
LIG3P49916 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC15.24■□□□□ 0.03
LIG3P49916 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC15.24■□□□□ 0.03
LIG3P49916 VENTXP1-201ENST00000569334 2716 ntBASIC15.24■□□□□ 0.03
LIG3P49916 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC15.24■□□□□ 0.03
LIG3P49916 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
LIG3P49916 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
LIG3P49916 SLC9A3P3-201ENST00000457608 2229 ntBASIC15.24■□□□□ 0.03
LIG3P49916 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
LIG3P49916 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC15.24■□□□□ 0.03
LIG3P49916 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.24■□□□□ 0.03
LIG3P49916 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
LIG3P49916 STX1A-203ENST00000395155 783 ntTSL 2 BASIC15.24■□□□□ 0.03
LIG3P49916 AC004945.1-201ENST00000416738 983 ntBASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms