Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 CACYBPP3-201ENST00000406011 625 ntBASIC18.2■□□□□ 0.5
RXRBP28702 FAM25E-201ENST00000411791 322 ntTSL 3 BASIC18.2■□□□□ 0.5
RXRBP28702 PHBP3-201ENST00000412562 819 ntBASIC18.2■□□□□ 0.5
RXRBP28702 SMIM26-202ENST00000435844 575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 CLNK-203ENST00000507719 1143 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 KIAA1191-210ENST00000510164 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 IGHV7-56-201ENST00000518372 351 ntBASIC18.2■□□□□ 0.5
RXRBP28702 WISP1-205ENST00000519433 545 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 AC116914.2-201ENST00000571741 291 ntTSL 5 BASIC18.2■□□□□ 0.5
RXRBP28702 ZNF677-207ENST00000598806 701 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC18.2■□□□□ 0.5
RXRBP28702 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 KRT18P40-201ENST00000599859 1571 ntBASIC18.2■□□□□ 0.5
RXRBP28702 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
RXRBP28702 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.2■□□□□ 0.5
RXRBP28702 PIN4-203ENST00000373669 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 KRT18P45-201ENST00000515347 1333 ntBASIC18.2■□□□□ 0.5
RXRBP28702 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RXRBP28702 GABPB1-206ENST00000543881 1450 ntTSL 2 BASIC18.2■□□□□ 0.5
RXRBP28702 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
RXRBP28702 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RXRBP28702 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RXRBP28702 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
RXRBP28702 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RXRBP28702 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
RXRBP28702 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
RXRBP28702 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
RXRBP28702 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
RXRBP28702 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
RXRBP28702 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RXRBP28702 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC18.19■□□□□ 0.5
RXRBP28702 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RXRBP28702 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.19■□□□□ 0.5
RXRBP28702 OR52N1-201ENST00000317078 963 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
RXRBP28702 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RXRBP28702 MYL1-202ENST00000352451 1065 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RXRBP28702 UBIAD1-201ENST00000376804 825 ntTSL 2 BASIC18.19■□□□□ 0.5
RXRBP28702 AP001331.1-201ENST00000413008 1015 ntBASIC18.19■□□□□ 0.5
RXRBP28702 SNAP25-AS1-202ENST00000426491 804 ntTSL 5 BASIC18.19■□□□□ 0.5
RXRBP28702 MAP1LC3BP1-202ENST00000438342 516 ntTSL 3 BASIC18.19■□□□□ 0.5
RXRBP28702 RPL21P135-201ENST00000442539 791 ntBASIC18.19■□□□□ 0.5
RXRBP28702 RAB6B-205ENST00000486858 880 ntTSL 2 BASIC18.19■□□□□ 0.5
RXRBP28702 CD81-209ENST00000492627 886 ntTSL 3 BASIC18.19■□□□□ 0.5
RXRBP28702 H1FOO-202ENST00000503977 881 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RXRBP28702 AC253536.5-201ENST00000506097 347 ntBASIC18.19■□□□□ 0.5
RXRBP28702 AC100858.2-201ENST00000531948 487 ntTSL 3 BASIC18.19■□□□□ 0.5
RXRBP28702 AC027290.1-201ENST00000537827 484 ntTSL 5 BASIC18.19■□□□□ 0.5
RXRBP28702 CACNA1C-AS1-203ENST00000544517 742 ntTSL 4 BASIC18.19■□□□□ 0.5
RXRBP28702 EIF5A-207ENST00000572815 811 ntTSL 5 BASIC18.19■□□□□ 0.5
RXRBP28702 NAA60-236ENST00000577013 575 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RXRBP28702 MIR663AHG-218ENST00000598448 804 ntTSL 5 BASIC18.19■□□□□ 0.5
RXRBP28702 AC006547.1-206ENST00000600617 878 ntTSL 5 BASIC18.19■□□□□ 0.5
RXRBP28702 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC18.19■□□□□ 0.5
RXRBP28702 AL669831.3-208ENST00000634337 891 ntTSL 5 BASIC18.19■□□□□ 0.5
RXRBP28702 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RXRBP28702 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RXRBP28702 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
RXRBP28702 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RXRBP28702 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RXRBP28702 PNLIPRP2-201ENST00000579578 1482 ntAPPRIS P5 TSL 2 BASIC18.19■□□□□ 0.5
RXRBP28702 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
RXRBP28702 AC080080.1-201ENST00000625121 2420 ntBASIC18.19■□□□□ 0.5
RXRBP28702 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RXRBP28702 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RXRBP28702 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RXRBP28702 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RXRBP28702 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.18■□□□□ 0.5
RXRBP28702 OR2C1-201ENST00000304936 1406 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
RXRBP28702 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RXRBP28702 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
RXRBP28702 RANGRF-201ENST00000226105 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RXRBP28702 LYG2-201ENST00000333017 862 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
RXRBP28702 PMF1-201ENST00000368273 884 ntTSL 2 BASIC18.18■□□□□ 0.5
RXRBP28702 AL512422.2-201ENST00000426453 551 ntTSL 2 BASIC18.18■□□□□ 0.5
RXRBP28702 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC18.18■□□□□ 0.5
RXRBP28702 SMCR2-201ENST00000456090 564 ntTSL 2 BASIC18.18■□□□□ 0.5
RXRBP28702 AC124242.1-203ENST00000517747 817 ntTSL 3 BASIC18.18■□□□□ 0.5
RXRBP28702 AC022634.2-201ENST00000521504 382 ntTSL 3 BASIC18.18■□□□□ 0.5
RXRBP28702 SORD2P-201ENST00000558556 1069 ntBASIC18.18■□□□□ 0.5
RXRBP28702 DNM1P50-201ENST00000565767 508 ntBASIC18.18■□□□□ 0.5
RXRBP28702 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC18.18■□□□□ 0.5
RXRBP28702 AC003688.2-201ENST00000576271 415 ntTSL 3 BASIC18.18■□□□□ 0.5
RXRBP28702 SKINT1L-204ENST00000604015 540 ntTSL 4 BASIC18.18■□□□□ 0.5
RXRBP28702 AC007274.3-201ENST00000619838 385 ntBASIC18.18■□□□□ 0.5
RXRBP28702 AC137723.2-201ENST00000623540 398 ntBASIC18.18■□□□□ 0.5
RXRBP28702 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RXRBP28702 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
RXRBP28702 STK16-202ENST00000409260 1493 ntTSL 5 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms