Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC17.37■□□□□ 0.37
COL5A3P25940 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A3P25940 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
COL5A3P25940 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A3P25940 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
COL5A3P25940 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC17.37■□□□□ 0.37
COL5A3P25940 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A3P25940 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
COL5A3P25940 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
COL5A3P25940 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC17.37■□□□□ 0.37
COL5A3P25940 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC17.37■□□□□ 0.37
COL5A3P25940 AHCYP3-201ENST00000420053 1279 ntBASIC17.37■□□□□ 0.37
COL5A3P25940 AL359092.2-201ENST00000423330 585 ntBASIC17.37■□□□□ 0.37
COL5A3P25940 HLA-W-207ENST00000439514 771 ntBASIC17.37■□□□□ 0.37
COL5A3P25940 TPT1P6-201ENST00000458298 514 ntBASIC17.37■□□□□ 0.37
COL5A3P25940 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC17.37■□□□□ 0.37
COL5A3P25940 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC17.37■□□□□ 0.37
COL5A3P25940 ABCC6P1-203ENST00000565566 1170 ntBASIC17.37■□□□□ 0.37
COL5A3P25940 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC17.37■□□□□ 0.37
COL5A3P25940 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC17.37■□□□□ 0.37
COL5A3P25940 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC17.37■□□□□ 0.37
COL5A3P25940 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A3P25940 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC17.37■□□□□ 0.37
COL5A3P25940 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
COL5A3P25940 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC17.37■□□□□ 0.37
COL5A3P25940 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A3P25940 AL390755.1-201ENST00000623716 2027 ntBASIC17.37■□□□□ 0.37
COL5A3P25940 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
COL5A3P25940 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A3P25940 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.37■□□□□ 0.37
COL5A3P25940 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A3P25940 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC17.36■□□□□ 0.37
COL5A3P25940 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL5A3P25940 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
COL5A3P25940 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
COL5A3P25940 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL5A3P25940 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.36■□□□□ 0.37
COL5A3P25940 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC17.36■□□□□ 0.37
COL5A3P25940 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC17.36■□□□□ 0.37
COL5A3P25940 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC17.36■□□□□ 0.37
COL5A3P25940 AC108724.1-201ENST00000481669 352 ntBASIC17.36■□□□□ 0.37
COL5A3P25940 EMP3-204ENST00000596315 761 ntTSL 2 BASIC17.36■□□□□ 0.37
COL5A3P25940 AC233280.19-201ENST00000633223 136 ntBASIC17.36■□□□□ 0.37
COL5A3P25940 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL5A3P25940 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL5A3P25940 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
COL5A3P25940 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC17.36■□□□□ 0.37
COL5A3P25940 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL5A3P25940 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL5A3P25940 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC17.36■□□□□ 0.37
COL5A3P25940 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
COL5A3P25940 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC17.36■□□□□ 0.37
COL5A3P25940 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC17.35■□□□□ 0.37
COL5A3P25940 CMTM5-204ENST00000382809 378 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A3P25940 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
COL5A3P25940 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC17.35■□□□□ 0.37
COL5A3P25940 FTH1P18-201ENST00000412071 549 ntBASIC17.35■□□□□ 0.37
COL5A3P25940 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC17.35■□□□□ 0.37
COL5A3P25940 AC245140.2-201ENST00000624054 1939 ntBASIC17.35■□□□□ 0.37
COL5A3P25940 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC17.35■□□□□ 0.37
COL5A3P25940 AL008638.4-201ENST00000624792 1315 ntBASIC17.35■□□□□ 0.37
COL5A3P25940 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
COL5A3P25940 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A3P25940 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A3P25940 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A3P25940 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC17.35■□□□□ 0.37
COL5A3P25940 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A3P25940 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC17.35■□□□□ 0.37
COL5A3P25940 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL5A3P25940 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
COL5A3P25940 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A3P25940 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL5A3P25940 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A3P25940 GOLGA8VP-201ENST00000559009 1798 ntBASIC17.35■□□□□ 0.37
COL5A3P25940 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.35■□□□□ 0.37
COL5A3P25940 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A3P25940 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.35■□□□□ 0.37
COL5A3P25940 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A3P25940 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL5A3P25940 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC17.35■□□□□ 0.37
COL5A3P25940 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC17.35■□□□□ 0.37
COL5A3P25940 AP000439.2-201ENST00000542064 726 ntTSL 2 BASIC17.35■□□□□ 0.37
COL5A3P25940 AL136040.1-201ENST00000557775 601 ntTSL 3 BASIC17.35■□□□□ 0.37
COL5A3P25940 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
COL5A3P25940 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC17.35■□□□□ 0.37
COL5A3P25940 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A3P25940 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A3P25940 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A3P25940 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC17.35■□□□□ 0.37
COL5A3P25940 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL5A3P25940 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC17.34■□□□□ 0.37
COL5A3P25940 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A3P25940 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC17.34■□□□□ 0.37
COL5A3P25940 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A3P25940 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A3P25940 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A3P25940 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A3P25940 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL5A3P25940 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC17.34■□□□□ 0.37
COL5A3P25940 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms