Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A3P12111 MROH4P-201ENST00000431302 1578 ntBASIC14.31□□□□□ -0.12
COL6A3P12111 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.31□□□□□ -0.12
COL6A3P12111 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A3P12111 VPREB3-201ENST00000248948 610 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A3P12111 ROPN1B-201ENST00000251776 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A3P12111 RARRES3-202ENST00000354445 696 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
COL6A3P12111 PRDX4-201ENST00000379331 852 ntTSL 2 BASIC14.31□□□□□ -0.12
COL6A3P12111 VPREB3-202ENST00000398465 503 ntTSL 3 BASIC14.31□□□□□ -0.12
COL6A3P12111 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC14.31□□□□□ -0.12
COL6A3P12111 TINF2-210ENST00000559019 885 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
COL6A3P12111 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A3P12111 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
COL6A3P12111 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A3P12111 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
COL6A3P12111 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A3P12111 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A3P12111 FATE1-201ENST00000370350 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A3P12111 CDA-201ENST00000375071 963 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A3P12111 CCDC103-203ENST00000410027 571 ntTSL 4 BASIC14.31□□□□□ -0.12
COL6A3P12111 KRT18P8-201ENST00000581937 1246 ntBASIC14.31□□□□□ -0.12
COL6A3P12111 AL109983.1-201ENST00000603234 646 ntBASIC14.31□□□□□ -0.12
COL6A3P12111 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A3P12111 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
COL6A3P12111 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.3□□□□□ -0.12
COL6A3P12111 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A3P12111 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A3P12111 RNA5SP84-201ENST00000364740 107 ntBASIC14.3□□□□□ -0.12
COL6A3P12111 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A3P12111 AL021407.3-201ENST00000407522 486 ntBASIC14.3□□□□□ -0.12
COL6A3P12111 TSEN15P3-201ENST00000422363 367 ntBASIC14.3□□□□□ -0.12
COL6A3P12111 AC002066.1-201ENST00000446355 514 ntTSL 5 BASIC14.3□□□□□ -0.12
COL6A3P12111 AC244102.2-201ENST00000597568 955 ntBASIC14.3□□□□□ -0.12
COL6A3P12111 Metazoa_SRP.97-201ENST00000618280 304 ntBASIC14.3□□□□□ -0.12
COL6A3P12111 CHIAP2-204ENST00000532686 1449 ntBASIC14.3□□□□□ -0.12
COL6A3P12111 AC023024.2-201ENST00000623561 1993 ntBASIC14.3□□□□□ -0.12
COL6A3P12111 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A3P12111 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A3P12111 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A3P12111 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A3P12111 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A3P12111 TAC3-205ENST00000415231 588 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
COL6A3P12111 AKR1B1P4-201ENST00000426552 922 ntBASIC14.3□□□□□ -0.12
COL6A3P12111 RN7SL229P-201ENST00000495651 299 ntBASIC14.3□□□□□ -0.12
COL6A3P12111 AC090192.2-201ENST00000517482 553 ntTSL 4 BASIC14.3□□□□□ -0.12
COL6A3P12111 CSRP1-219ENST00000533432 1149 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
COL6A3P12111 AL512310.5-201ENST00000551999 515 ntBASIC14.3□□□□□ -0.12
COL6A3P12111 U62317.4-201ENST00000609758 448 ntBASIC14.3□□□□□ -0.12
COL6A3P12111 Metazoa_SRP.180-201ENST00000612546 322 ntBASIC14.3□□□□□ -0.12
COL6A3P12111 AC080038.2-201ENST00000617734 423 ntBASIC14.3□□□□□ -0.12
COL6A3P12111 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
COL6A3P12111 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
COL6A3P12111 SUCLG2-204ENST00000493112 1516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A3P12111 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A3P12111 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.3□□□□□ -0.12
COL6A3P12111 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A3P12111 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A3P12111 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A3P12111 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
COL6A3P12111 BTN2A2-204ENST00000432533 1570 ntTSL 2 BASIC14.3□□□□□ -0.12
COL6A3P12111 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC14.3□□□□□ -0.12
COL6A3P12111 TRBV20OR9-2-201ENST00000379435 416 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
COL6A3P12111 WSB1-203ENST00000427287 1149 ntTSL 2 BASIC14.3□□□□□ -0.12
COL6A3P12111 LANCL1-203ENST00000431941 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A3P12111 FAR1-IT1-201ENST00000525233 368 ntTSL 3 BASIC14.3□□□□□ -0.12
COL6A3P12111 AC078878.2-201ENST00000543451 286 ntTSL 5 BASIC14.3□□□□□ -0.12
COL6A3P12111 WSB1-213ENST00000583193 552 ntTSL 4 BASIC14.3□□□□□ -0.12
COL6A3P12111 TTC28-AS1_1.1-201ENST00000614690 162 ntBASIC14.3□□□□□ -0.12
COL6A3P12111 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
COL6A3P12111 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.3□□□□□ -0.12
COL6A3P12111 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 HLA-DQA1-201ENST00000343139 1591 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
COL6A3P12111 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.29□□□□□ -0.12
COL6A3P12111 C18orf15-201ENST00000623680 2534 ntBASIC14.29□□□□□ -0.12
COL6A3P12111 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC14.29□□□□□ -0.12
COL6A3P12111 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 CDC20P1-201ENST00000488829 1500 ntBASIC14.29□□□□□ -0.12
COL6A3P12111 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC14.29□□□□□ -0.12
COL6A3P12111 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC14.29□□□□□ -0.12
COL6A3P12111 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 SYNGR4-201ENST00000344846 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 AC116552.1-201ENST00000563243 733 ntTSL 3 BASIC14.29□□□□□ -0.12
COL6A3P12111 AC109826.1-203ENST00000624259 1105 ntTSL 5 BASIC14.29□□□□□ -0.12
COL6A3P12111 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.29□□□□□ -0.12
COL6A3P12111 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
COL6A3P12111 PES1P2-201ENST00000449745 1735 ntBASIC14.29□□□□□ -0.12
COL6A3P12111 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
COL6A3P12111 CA6-205ENST00000480186 1493 ntTSL 2 BASIC14.29□□□□□ -0.12
COL6A3P12111 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC14.29□□□□□ -0.12
COL6A3P12111 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 SEM1-201ENST00000248566 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.29□□□□□ -0.12
COL6A3P12111 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
COL6A3P12111 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL6A3P12111 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms