Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CISHQ9NSE2 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC15.31■□□□□ 0.04
CISHQ9NSE2 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CISHQ9NSE2 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CISHQ9NSE2 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CISHQ9NSE2 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CISHQ9NSE2 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CISHQ9NSE2 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CISHQ9NSE2 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC15.31■□□□□ 0.04
CISHQ9NSE2 LINC01165-201ENST00000445190 1623 ntBASIC15.31■□□□□ 0.04
CISHQ9NSE2 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CISHQ9NSE2 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CISHQ9NSE2 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CISHQ9NSE2 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CISHQ9NSE2 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC15.31■□□□□ 0.04
CISHQ9NSE2 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CISHQ9NSE2 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
CISHQ9NSE2 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 KRT18P15-201ENST00000458108 1291 ntBASIC15.3■□□□□ 0.04
CISHQ9NSE2 LINC00115-201ENST00000473798 1317 ntBASIC15.3■□□□□ 0.04
CISHQ9NSE2 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 RN7SL277P-201ENST00000481521 288 ntBASIC15.3■□□□□ 0.04
CISHQ9NSE2 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 HIST2H2BC-201ENST00000498492 580 ntBASIC15.3■□□□□ 0.04
CISHQ9NSE2 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 AL157791.1-201ENST00000553667 1699 ntBASIC15.3■□□□□ 0.04
CISHQ9NSE2 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 MAX-218ENST00000557746 571 ntTSL 4 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC15.3■□□□□ 0.04
CISHQ9NSE2 BAP1-211ENST00000615113 489 ntBASIC15.3■□□□□ 0.04
CISHQ9NSE2 AC041040.2-201ENST00000622926 2899 ntBASIC15.3■□□□□ 0.04
CISHQ9NSE2 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CISHQ9NSE2 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CISHQ9NSE2 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC15.29■□□□□ 0.04
CISHQ9NSE2 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.29■□□□□ 0.04
CISHQ9NSE2 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.29■□□□□ 0.04
CISHQ9NSE2 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CISHQ9NSE2 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CISHQ9NSE2 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
CISHQ9NSE2 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CISHQ9NSE2 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CISHQ9NSE2 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
CISHQ9NSE2 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CISHQ9NSE2 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CISHQ9NSE2 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC15.29■□□□□ 0.04
CISHQ9NSE2 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
CISHQ9NSE2 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CISHQ9NSE2 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15.29■□□□□ 0.04
CISHQ9NSE2 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CISHQ9NSE2 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CISHQ9NSE2 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CISHQ9NSE2 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC15.29■□□□□ 0.04
CISHQ9NSE2 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
CISHQ9NSE2 NCR3-202ENST00000376071 541 ntTSL 5 BASIC15.29■□□□□ 0.04
CISHQ9NSE2 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CISHQ9NSE2 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC15.29■□□□□ 0.04
CISHQ9NSE2 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CISHQ9NSE2 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms