Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 AC011481.3-201ENST00000623895 5594 ntBASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 CES1P1-201ENST00000421606 1704 ntBASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 TEX30-203ENST00000376022 828 ntTSL 2 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 PNMT-202ENST00000394246 821 ntTSL 2 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 METTL26-204ENST00000397665 558 ntTSL 2 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 KLF2P2-201ENST00000416807 1039 ntBASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 TLE1P1-201ENST00000422965 589 ntBASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 REEP4-207ENST00000523293 913 ntTSL 3 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 AC055876.2-201ENST00000531834 546 ntBASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 DUX4L47-201ENST00000566374 394 ntBASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 IFT20-206ENST00000578122 834 ntTSL 2 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 IFT20-208ENST00000578985 831 ntTSL 3 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 BRI3BPP1-201ENST00000594224 787 ntBASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 AL603764.1-201ENST00000636452 321 ntBASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 CICP16-201ENST00000502609 2813 ntBASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 AC114271.1-201ENST00000612689 2813 ntBASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 AC012313.8-201ENST00000595059 5402 ntBASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 ADK-205ENST00000539909 1866 ntTSL 2 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CHMP1AQ9HD42 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 AC015688.4-201ENST00000580780 1647 ntBASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 PERP-201ENST00000421351 4290 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 NFAT5-209ENST00000567239 6376 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 SYNCRIP-201ENST00000355238 6449 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 RALGPS1-201ENST00000259351 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 MYO1D-202ENST00000394649 5451 ntTSL 5 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 HNRNPA1P40-201ENST00000426371 1278 ntBASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 CD81-207ENST00000481687 890 ntTSL 2 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 AC093004.1-201ENST00000508850 424 ntBASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 AC092364.2-202ENST00000597012 1073 ntBASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 AC092117.1-201ENST00000621230 3250 ntBASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 RTL10-201ENST00000328554 6619 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 PPP4R3B-203ENST00000611717 5243 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CHMP1AQ9HD42 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 128.6 ms