Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 AC007881.3-201ENST00000608897 607 ntBASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 AC104506.1-201ENST00000609247 429 ntBASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 LINC01783-202ENST00000614408 828 ntBASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 MIR6769A-201ENST00000617340 73 ntBASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 BX284668.2-205ENST00000619677 828 ntBASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 AC092299.1-201ENST00000632679 757 ntBASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 KRT8P24-201ENST00000560290 1559 ntBASIC17.39■□□□□ 0.37
RPAP1Q9BWH6 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 AP000358.1-201ENST00000456260 156 ntBASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 PGAM1P5-201ENST00000548011 764 ntBASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 WT1-AS_6.1-201ENST00000614919 121 ntBASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 AC068587.6-202ENST00000641839 5619 ntBASIC17.38■□□□□ 0.37
RPAP1Q9BWH6 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 CFL1-206ENST00000527344 962 ntTSL 2 BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPAP1Q9BWH6 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RPAP1Q9BWH6 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
RPAP1Q9BWH6 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
RPAP1Q9BWH6 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RPAP1Q9BWH6 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC17.36■□□□□ 0.37
RPAP1Q9BWH6 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RPAP1Q9BWH6 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RPAP1Q9BWH6 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC17.36■□□□□ 0.37
RPAP1Q9BWH6 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RPAP1Q9BWH6 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms