Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 AL627389.1-201ENST00000413508 1182 ntBASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 PPP1R2P4-201ENST00000424051 595 ntBASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 AC098934.1-203ENST00000442868 1262 ntBASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 RN7SL564P-201ENST00000496309 250 ntBASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 AP000322.3-201ENST00000608665 388 ntBASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 TP53-221ENST00000615910 1149 ntTSL 5 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 AC009084.3-201ENST00000623356 437 ntBASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 AMT-256ENST00000638063 1783 ntTSL 5 BASIC15.19■□□□□ 0.02
PAAF1Q9BRP4 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 AC103592.1-201ENST00000394513 664 ntBASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 RPL13AP19-201ENST00000434320 584 ntBASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 CHCHD2P2-201ENST00000503744 321 ntBASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 AP003398.1-201ENST00000531124 318 ntBASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 AC005912.2-201ENST00000619492 2400 ntBASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 KRT8P43-201ENST00000406052 1458 ntBASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PAAF1Q9BRP4 SHMT1P1-201ENST00000419974 1312 ntBASIC15.17■□□□□ 0.02
PAAF1Q9BRP4 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC15.17■□□□□ 0.02
PAAF1Q9BRP4 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC15.17■□□□□ 0.02
PAAF1Q9BRP4 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms