Protein–RNA interactions for Protein: Q92544

TM9SF4, Transmembrane 9 superfamily member 4, humanhuman

Predictions only

Length 642 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4Q92544 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
TM9SF4Q92544 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
TM9SF4Q92544 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TM9SF4Q92544 HNRNPA1P41-201ENST00000397777 928 ntBASIC13.67□□□□□ -0.22
TM9SF4Q92544 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 RPL18P13-201ENST00000478088 569 ntBASIC13.67□□□□□ -0.22
TM9SF4Q92544 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 RCC2P8-201ENST00000502779 1035 ntBASIC13.67□□□□□ -0.22
TM9SF4Q92544 POU5F1P2-201ENST00000521750 823 ntBASIC13.67□□□□□ -0.22
TM9SF4Q92544 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 AC008805.1-201ENST00000590892 364 ntBASIC13.67□□□□□ -0.22
TM9SF4Q92544 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TM9SF4Q92544 AC132192.2-201ENST00000596206 1147 ntBASIC13.67□□□□□ -0.22
TM9SF4Q92544 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 AL353770.1-201ENST00000614915 403 ntBASIC13.67□□□□□ -0.22
TM9SF4Q92544 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TM9SF4Q92544 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 AC011840.2-201ENST00000563063 1520 ntBASIC13.67□□□□□ -0.22
TM9SF4Q92544 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TM9SF4Q92544 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TM9SF4Q92544 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TM9SF4Q92544 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 AL359183.1-201ENST00000623796 2132 ntBASIC13.67□□□□□ -0.22
TM9SF4Q92544 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TM9SF4Q92544 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TM9SF4Q92544 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TM9SF4Q92544 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
TM9SF4Q92544 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.67□□□□□ -0.22
TM9SF4Q92544 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 AC067750.1-201ENST00000608826 6545 ntBASIC13.66□□□□□ -0.22
TM9SF4Q92544 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 ACTG1P2-201ENST00000415776 1125 ntBASIC13.66□□□□□ -0.22
TM9SF4Q92544 ACTG1P11-201ENST00000425411 1125 ntBASIC13.66□□□□□ -0.22
TM9SF4Q92544 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 AL035414.1-201ENST00000451327 857 ntBASIC13.66□□□□□ -0.22
TM9SF4Q92544 AC234782.1-201ENST00000451950 919 ntBASIC13.66□□□□□ -0.22
TM9SF4Q92544 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 CCNC-217ENST00000523985 958 ntTSL 2 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 PCBP2-OT1-201ENST00000634357 590 ntBASIC13.66□□□□□ -0.22
TM9SF4Q92544 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
TM9SF4Q92544 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
TM9SF4Q92544 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms