Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AP002353.1-201ENST00000528257 1599 ntBASIC12.88□□□□□ -0.35
H3F3AP84243 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
H3F3AP84243 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
H3F3AP84243 CCT8L1P-201ENST00000465400 1674 ntBASIC12.88□□□□□ -0.35
H3F3AP84243 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC12.88□□□□□ -0.35
H3F3AP84243 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
H3F3AP84243 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
H3F3AP84243 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
H3F3AP84243 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
H3F3AP84243 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
H3F3AP84243 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
H3F3AP84243 AC079781.5-202ENST00000641784 3743 ntBASIC12.88□□□□□ -0.35
H3F3AP84243 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
H3F3AP84243 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
H3F3AP84243 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
H3F3AP84243 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
H3F3AP84243 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
H3F3AP84243 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC12.88□□□□□ -0.35
H3F3AP84243 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
H3F3AP84243 AC090643.2-201ENST00000623442 2029 ntBASIC12.88□□□□□ -0.35
H3F3AP84243 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC12.88□□□□□ -0.35
H3F3AP84243 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
H3F3AP84243 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
H3F3AP84243 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC12.87□□□□□ -0.35
H3F3AP84243 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
H3F3AP84243 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
H3F3AP84243 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
H3F3AP84243 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
H3F3AP84243 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC12.87□□□□□ -0.35
H3F3AP84243 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
H3F3AP84243 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC12.87□□□□□ -0.35
H3F3AP84243 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 AC020907.1-201ENST00000616460 1350 ntBASIC12.87□□□□□ -0.35
H3F3AP84243 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC12.87□□□□□ -0.35
H3F3AP84243 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 RN7SKP214-201ENST00000364208 315 ntBASIC12.87□□□□□ -0.35
H3F3AP84243 USP17L6P-201ENST00000382470 1197 ntBASIC12.87□□□□□ -0.35
H3F3AP84243 MIR1247-201ENST00000408206 136 ntBASIC12.87□□□□□ -0.35
H3F3AP84243 GPAA1P2-201ENST00000417923 928 ntBASIC12.87□□□□□ -0.35
H3F3AP84243 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC12.87□□□□□ -0.35
H3F3AP84243 AC092580.1-201ENST00000433998 658 ntBASIC12.87□□□□□ -0.35
H3F3AP84243 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC12.87□□□□□ -0.35
H3F3AP84243 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC12.87□□□□□ -0.35
H3F3AP84243 BX284668.4-201ENST00000453917 508 ntBASIC12.87□□□□□ -0.35
H3F3AP84243 OARD1-204ENST00000464633 717 ntTSL 2 BASIC12.87□□□□□ -0.35
H3F3AP84243 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC12.87□□□□□ -0.35
H3F3AP84243 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC12.87□□□□□ -0.35
H3F3AP84243 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC12.87□□□□□ -0.35
H3F3AP84243 AL645939.5-201ENST00000606834 243 ntBASIC12.87□□□□□ -0.35
H3F3AP84243 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC12.87□□□□□ -0.35
H3F3AP84243 LINC01230-201ENST00000625222 3017 ntBASIC12.87□□□□□ -0.35
H3F3AP84243 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
H3F3AP84243 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC12.87□□□□□ -0.35
H3F3AP84243 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC12.87□□□□□ -0.35
H3F3AP84243 ABR-228ENST00000574437 3196 ntTSL 5 BASIC12.87□□□□□ -0.35
H3F3AP84243 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC12.87□□□□□ -0.35
H3F3AP84243 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC12.87□□□□□ -0.35
H3F3AP84243 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
H3F3AP84243 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC12.86□□□□□ -0.35
H3F3AP84243 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
H3F3AP84243 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC12.86□□□□□ -0.35
H3F3AP84243 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
H3F3AP84243 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC12.86□□□□□ -0.35
H3F3AP84243 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC12.86□□□□□ -0.35
H3F3AP84243 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC12.86□□□□□ -0.35
H3F3AP84243 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
H3F3AP84243 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
H3F3AP84243 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC12.86□□□□□ -0.35
H3F3AP84243 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
H3F3AP84243 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
H3F3AP84243 DDC-213ENST00000617822 1809 ntTSL 3 BASIC12.86□□□□□ -0.35
H3F3AP84243 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
H3F3AP84243 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC12.86□□□□□ -0.35
H3F3AP84243 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
H3F3AP84243 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
H3F3AP84243 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC12.86□□□□□ -0.35
H3F3AP84243 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
H3F3AP84243 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC12.86□□□□□ -0.35
H3F3AP84243 AL928921.2-201ENST00000641325 2442 ntBASIC12.86□□□□□ -0.35
H3F3AP84243 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms