Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC16.11■□□□□ 0.17
CIITAP33076 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC16.11■□□□□ 0.17
CIITAP33076 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC16.11■□□□□ 0.17
CIITAP33076 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC16.1■□□□□ 0.17
CIITAP33076 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CIITAP33076 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC16.1■□□□□ 0.17
CIITAP33076 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC16.1■□□□□ 0.17
CIITAP33076 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.1■□□□□ 0.17
CIITAP33076 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC16.1■□□□□ 0.17
CIITAP33076 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CIITAP33076 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CIITAP33076 AC073869.2-201ENST00000417338 1026 ntBASIC16.1■□□□□ 0.17
CIITAP33076 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC16.1■□□□□ 0.17
CIITAP33076 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC16.1■□□□□ 0.17
CIITAP33076 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC16.1■□□□□ 0.17
CIITAP33076 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC16.1■□□□□ 0.17
CIITAP33076 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC16.1■□□□□ 0.17
CIITAP33076 AC005740.1-201ENST00000515639 522 ntBASIC16.1■□□□□ 0.17
CIITAP33076 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC16.1■□□□□ 0.17
CIITAP33076 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC16.1■□□□□ 0.17
CIITAP33076 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC16.1■□□□□ 0.17
CIITAP33076 RN7SL455P-201ENST00000580629 282 ntBASIC16.1■□□□□ 0.17
CIITAP33076 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
CIITAP33076 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CIITAP33076 USP39-207ENST00000450066 2086 ntTSL 2 BASIC16.1■□□□□ 0.17
CIITAP33076 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.1■□□□□ 0.17
CIITAP33076 AL590824.1-201ENST00000403828 1349 ntBASIC16.1■□□□□ 0.17
CIITAP33076 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 MARK2P16-201ENST00000605714 1723 ntBASIC16.1■□□□□ 0.17
CIITAP33076 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CIITAP33076 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC16.09■□□□□ 0.17
CIITAP33076 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
CIITAP33076 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC16.09■□□□□ 0.17
CIITAP33076 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC16.09■□□□□ 0.17
CIITAP33076 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 MIR645-201ENST00000385283 94 ntBASIC16.09■□□□□ 0.17
CIITAP33076 HLA-DQB2-229ENST00000411527 1059 ntBASIC16.09■□□□□ 0.17
CIITAP33076 AC006987.1-201ENST00000413610 527 ntBASIC16.09■□□□□ 0.17
CIITAP33076 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC16.09■□□□□ 0.17
CIITAP33076 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC16.09■□□□□ 0.17
CIITAP33076 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC16.09■□□□□ 0.17
CIITAP33076 AL606495.2-201ENST00000605867 535 ntBASIC16.09■□□□□ 0.17
CIITAP33076 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC16.09■□□□□ 0.17
CIITAP33076 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
CIITAP33076 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
CIITAP33076 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CIITAP33076 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC16.09■□□□□ 0.17
CIITAP33076 CAP2P1-201ENST00000557743 1390 ntBASIC16.09■□□□□ 0.17
CIITAP33076 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CIITAP33076 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.09■□□□□ 0.17
CIITAP33076 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
CIITAP33076 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CIITAP33076 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms