Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 SLC25A24P2-201ENST00000415059 510 ntBASIC14.85□□□□□ -0.03
RPRD1AQ96P16 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 AC092580.1-201ENST00000433998 658 ntBASIC14.85□□□□□ -0.03
RPRD1AQ96P16 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 AC024681.1-201ENST00000521917 487 ntBASIC14.85□□□□□ -0.03
RPRD1AQ96P16 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 MIR3188-201ENST00000583494 85 ntBASIC14.85□□□□□ -0.03
RPRD1AQ96P16 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RPRD1AQ96P16 LINC01165-201ENST00000445190 1623 ntBASIC14.84□□□□□ -0.03
RPRD1AQ96P16 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 MSRA-203ENST00000441698 788 ntTSL 2 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 AC012618.1-201ENST00000461223 412 ntBASIC14.84□□□□□ -0.03
RPRD1AQ96P16 AL161670.2-201ENST00000557650 1227 ntBASIC14.84□□□□□ -0.03
RPRD1AQ96P16 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 FRMPD2B-201ENST00000431305 1347 ntBASIC14.84□□□□□ -0.03
RPRD1AQ96P16 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RPRD1AQ96P16 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RPRD1AQ96P16 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
RPRD1AQ96P16 AC117489.1-201ENST00000625169 3217 ntBASIC14.83□□□□□ -0.03
RPRD1AQ96P16 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
RPRD1AQ96P16 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC14.83□□□□□ -0.03
RPRD1AQ96P16 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
RPRD1AQ96P16 AL009178.2-201ENST00000597278 2719 ntBASIC14.83□□□□□ -0.04
RPRD1AQ96P16 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RPRD1AQ96P16 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
RPRD1AQ96P16 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RPRD1AQ96P16 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
RPRD1AQ96P16 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.83□□□□□ -0.04
RPRD1AQ96P16 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RPRD1AQ96P16 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
RPRD1AQ96P16 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.83□□□□□ -0.04
RPRD1AQ96P16 RNA5SP359-201ENST00000364838 113 ntBASIC14.83□□□□□ -0.04
RPRD1AQ96P16 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
RPRD1AQ96P16 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
RPRD1AQ96P16 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC14.83□□□□□ -0.04
RPRD1AQ96P16 TSACC-208ENST00000481479 741 ntTSL 2 BASIC14.83□□□□□ -0.04
RPRD1AQ96P16 IGHV3OR16-16-201ENST00000563644 343 ntBASIC14.83□□□□□ -0.04
RPRD1AQ96P16 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms