Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ERCC4Q92889 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ERCC4Q92889 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ERCC4Q92889 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ERCC4Q92889 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.42■□□□□ 0.22
ERCC4Q92889 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ERCC4Q92889 ACTG1P3-201ENST00000431775 1114 ntBASIC16.42■□□□□ 0.22
ERCC4Q92889 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ERCC4Q92889 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.42■□□□□ 0.22
ERCC4Q92889 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
ERCC4Q92889 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ERCC4Q92889 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.42■□□□□ 0.22
ERCC4Q92889 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
ERCC4Q92889 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ERCC4Q92889 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC16.42■□□□□ 0.22
ERCC4Q92889 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC16.42■□□□□ 0.22
ERCC4Q92889 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
ERCC4Q92889 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ERCC4Q92889 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ERCC4Q92889 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ERCC4Q92889 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
ERCC4Q92889 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ERCC4Q92889 CETP-203ENST00000566128 1733 ntTSL 5 BASIC16.42■□□□□ 0.22
ERCC4Q92889 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ERCC4Q92889 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC16.41■□□□□ 0.22
ERCC4Q92889 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
ERCC4Q92889 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
ERCC4Q92889 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC16.41■□□□□ 0.22
ERCC4Q92889 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
ERCC4Q92889 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.41■□□□□ 0.22
ERCC4Q92889 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.41■□□□□ 0.22
ERCC4Q92889 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC16.41■□□□□ 0.22
ERCC4Q92889 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 AP001889.1-201ENST00000525414 633 ntBASIC16.41■□□□□ 0.22
ERCC4Q92889 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC16.41■□□□□ 0.22
ERCC4Q92889 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC16.41■□□□□ 0.22
ERCC4Q92889 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 Z82170.1-201ENST00000625081 3192 ntBASIC16.41■□□□□ 0.22
ERCC4Q92889 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 AC131212.3-201ENST00000624087 4219 ntBASIC16.41■□□□□ 0.22
ERCC4Q92889 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC16.41■□□□□ 0.22
ERCC4Q92889 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
ERCC4Q92889 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
ERCC4Q92889 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ERCC4Q92889 GOLGA8IP-202ENST00000611635 2100 ntBASIC16.4■□□□□ 0.22
ERCC4Q92889 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 RET-205ENST00000615310 4337 ntTSL 5 BASIC16.4■□□□□ 0.22
ERCC4Q92889 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
ERCC4Q92889 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.4■□□□□ 0.22
ERCC4Q92889 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.4■□□□□ 0.22
ERCC4Q92889 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.4■□□□□ 0.22
ERCC4Q92889 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.4■□□□□ 0.22
ERCC4Q92889 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.4■□□□□ 0.22
ERCC4Q92889 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC16.4■□□□□ 0.22
ERCC4Q92889 PTP4A1P2-201ENST00000546033 454 ntBASIC16.4■□□□□ 0.22
ERCC4Q92889 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.4■□□□□ 0.22
ERCC4Q92889 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.4■□□□□ 0.22
ERCC4Q92889 OR10B1P-201ENST00000601666 907 ntBASIC16.4■□□□□ 0.22
ERCC4Q92889 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC16.4■□□□□ 0.22
ERCC4Q92889 MEX3B-202ENST00000558133 4333 ntBASIC16.4■□□□□ 0.22
ERCC4Q92889 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC16.4■□□□□ 0.22
ERCC4Q92889 STK25-235ENST00000543554 2556 ntTSL 2 BASIC16.4■□□□□ 0.22
ERCC4Q92889 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC16.4■□□□□ 0.22
ERCC4Q92889 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
ERCC4Q92889 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC16.4■□□□□ 0.22
ERCC4Q92889 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
ERCC4Q92889 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ERCC4Q92889 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
ERCC4Q92889 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms