Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 AC018629.1-201ENST00000623381 1736 ntBASIC17■□□□□ 0.31
HMGB1P09429 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 AC004923.1-202ENST00000642106 209 ntBASIC17■□□□□ 0.31
HMGB1P09429 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC17■□□□□ 0.31
HMGB1P09429 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC17■□□□□ 0.31
HMGB1P09429 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
HMGB1P09429 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 DUSP10-201ENST00000366899 2676 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
HMGB1P09429 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC17■□□□□ 0.31
HMGB1P09429 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 AC010327.5-201ENST00000586923 3061 ntBASIC17■□□□□ 0.31
HMGB1P09429 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC17■□□□□ 0.31
HMGB1P09429 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGB1P09429 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGB1P09429 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HMGB1P09429 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 CETP-203ENST00000566128 1733 ntTSL 5 BASIC16.99■□□□□ 0.31
HMGB1P09429 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
HMGB1P09429 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HMGB1P09429 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC16.99■□□□□ 0.31
HMGB1P09429 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
HMGB1P09429 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
HMGB1P09429 AC103592.1-201ENST00000394513 664 ntBASIC16.99■□□□□ 0.31
HMGB1P09429 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGB1P09429 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC16.99■□□□□ 0.31
HMGB1P09429 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
HMGB1P09429 KRT18P8-201ENST00000581937 1246 ntBASIC16.99■□□□□ 0.31
HMGB1P09429 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC16.99■□□□□ 0.31
HMGB1P09429 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC16.99■□□□□ 0.31
HMGB1P09429 DDX5-235ENST00000630471 473 ntTSL 4 BASIC16.99■□□□□ 0.31
HMGB1P09429 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC16.99■□□□□ 0.31
HMGB1P09429 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGB1P09429 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGB1P09429 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
HMGB1P09429 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGB1P09429 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
HMGB1P09429 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC16.98■□□□□ 0.31
HMGB1P09429 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
HMGB1P09429 SHMT1P1-201ENST00000419974 1312 ntBASIC16.98■□□□□ 0.31
HMGB1P09429 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
HMGB1P09429 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
HMGB1P09429 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGB1P09429 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC16.98■□□□□ 0.31
HMGB1P09429 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGB1P09429 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
HMGB1P09429 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 AC078875.1-201ENST00000431907 724 ntBASIC16.98■□□□□ 0.31
HMGB1P09429 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGB1P09429 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC16.98■□□□□ 0.31
HMGB1P09429 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.98■□□□□ 0.31
HMGB1P09429 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.98■□□□□ 0.31
HMGB1P09429 AC005695.3-201ENST00000614522 232 ntBASIC16.98■□□□□ 0.31
HMGB1P09429 AC068587.8-201ENST00000641239 219 ntBASIC16.98■□□□□ 0.31
HMGB1P09429 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
HMGB1P09429 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 USP39-207ENST00000450066 2086 ntTSL 2 BASIC16.98■□□□□ 0.31
HMGB1P09429 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HMGB1P09429 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
HMGB1P09429 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGB1P09429 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGB1P09429 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms