Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC18.57■□□□□ 0.56
COL3A1P02461 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC18.57■□□□□ 0.56
COL3A1P02461 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC18.57■□□□□ 0.56
COL3A1P02461 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC18.57■□□□□ 0.56
COL3A1P02461 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC18.57■□□□□ 0.56
COL3A1P02461 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC18.57■□□□□ 0.56
COL3A1P02461 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
COL3A1P02461 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC18.57■□□□□ 0.56
COL3A1P02461 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
COL3A1P02461 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC18.57■□□□□ 0.56
COL3A1P02461 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
COL3A1P02461 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
COL3A1P02461 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL3A1P02461 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC18.56■□□□□ 0.56
COL3A1P02461 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
COL3A1P02461 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL3A1P02461 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL3A1P02461 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
COL3A1P02461 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC18.56■□□□□ 0.56
COL3A1P02461 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL3A1P02461 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL3A1P02461 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL3A1P02461 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
COL3A1P02461 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL3A1P02461 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL3A1P02461 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL3A1P02461 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
COL3A1P02461 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL3A1P02461 RNA5SP406-201ENST00000516106 112 ntBASIC18.56■□□□□ 0.56
COL3A1P02461 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC18.56■□□□□ 0.56
COL3A1P02461 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC18.56■□□□□ 0.56
COL3A1P02461 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC18.56■□□□□ 0.56
COL3A1P02461 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC18.56■□□□□ 0.56
COL3A1P02461 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC18.56■□□□□ 0.56
COL3A1P02461 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC18.56■□□□□ 0.56
COL3A1P02461 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
COL3A1P02461 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC18.56■□□□□ 0.56
COL3A1P02461 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
COL3A1P02461 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL3A1P02461 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL3A1P02461 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL3A1P02461 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL3A1P02461 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC18.56■□□□□ 0.56
COL3A1P02461 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL3A1P02461 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL3A1P02461 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
COL3A1P02461 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
COL3A1P02461 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC18.55■□□□□ 0.56
COL3A1P02461 LINC01230-201ENST00000625222 3017 ntBASIC18.55■□□□□ 0.56
COL3A1P02461 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.55■□□□□ 0.56
COL3A1P02461 PHB-210ENST00000511832 1509 ntTSL 2 BASIC18.55■□□□□ 0.56
COL3A1P02461 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
COL3A1P02461 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC18.55■□□□□ 0.56
COL3A1P02461 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC18.55■□□□□ 0.56
COL3A1P02461 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC18.55■□□□□ 0.56
COL3A1P02461 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC18.55■□□□□ 0.56
COL3A1P02461 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC18.55■□□□□ 0.56
COL3A1P02461 LINC00634-202ENST00000505157 222 ntBASIC18.55■□□□□ 0.56
COL3A1P02461 EEF1GP8-201ENST00000506566 1154 ntBASIC18.55■□□□□ 0.56
COL3A1P02461 AC026410.1-201ENST00000507366 1101 ntBASIC18.55■□□□□ 0.56
COL3A1P02461 RPS23-204ENST00000507980 836 ntTSL 2 BASIC18.55■□□□□ 0.56
COL3A1P02461 PARP8-218ENST00000513738 596 ntTSL 4 BASIC18.55■□□□□ 0.56
COL3A1P02461 RN7SKP155-201ENST00000516031 288 ntBASIC18.55■□□□□ 0.56
COL3A1P02461 DBP-202ENST00000593500 712 ntTSL 2 BASIC18.55■□□□□ 0.56
COL3A1P02461 GMFG-209ENST00000600322 622 ntTSL 5 BASIC18.55■□□□□ 0.56
COL3A1P02461 AC041040.2-201ENST00000622926 2899 ntBASIC18.55■□□□□ 0.56
COL3A1P02461 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC18.55■□□□□ 0.56
COL3A1P02461 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
COL3A1P02461 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
COL3A1P02461 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC18.55■□□□□ 0.56
COL3A1P02461 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC18.55■□□□□ 0.56
COL3A1P02461 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC18.55■□□□□ 0.56
COL3A1P02461 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL3A1P02461 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
COL3A1P02461 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC18.54■□□□□ 0.56
COL3A1P02461 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
COL3A1P02461 BANP-203ENST00000393207 2438 ntTSL 2 BASIC18.54■□□□□ 0.56
COL3A1P02461 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms