Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 USP39-220ENST00000613444 2161 ntTSL 2 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 AL136309.1-201ENST00000403917 691 ntBASIC14.24□□□□□ -0.13
MKS1Q9NXB0 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 PTP4A1P2-201ENST00000546033 454 ntBASIC14.24□□□□□ -0.13
MKS1Q9NXB0 AL512310.5-201ENST00000551999 515 ntBASIC14.24□□□□□ -0.13
MKS1Q9NXB0 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 AC025279.2-201ENST00000569730 653 ntBASIC14.24□□□□□ -0.13
MKS1Q9NXB0 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 AL358472.3-201ENST00000608147 415 ntBASIC14.24□□□□□ -0.13
MKS1Q9NXB0 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 ANKZF1-202ENST00000409849 2155 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 AC126335.2-201ENST00000623362 4637 ntBASIC14.24□□□□□ -0.13
MKS1Q9NXB0 TMBIM7P-202ENST00000641474 1516 ntBASIC14.24□□□□□ -0.13
MKS1Q9NXB0 AC026271.4-201ENST00000578214 1833 ntBASIC14.24□□□□□ -0.13
MKS1Q9NXB0 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
MKS1Q9NXB0 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 AC004623.1-201ENST00000624592 2127 ntBASIC14.23□□□□□ -0.13
MKS1Q9NXB0 SHMT1P1-201ENST00000419974 1312 ntBASIC14.23□□□□□ -0.13
MKS1Q9NXB0 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 SNORA50C-201ENST00000408535 133 ntBASIC14.23□□□□□ -0.13
MKS1Q9NXB0 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 FAM8A4P-201ENST00000435433 1213 ntBASIC14.23□□□□□ -0.13
MKS1Q9NXB0 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 AC021016.3-201ENST00000608367 477 ntBASIC14.23□□□□□ -0.13
MKS1Q9NXB0 SNORA50.1-201ENST00000628590 135 ntBASIC14.23□□□□□ -0.13
MKS1Q9NXB0 AL033527.5-201ENST00000641382 801 ntBASIC14.23□□□□□ -0.13
MKS1Q9NXB0 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
MKS1Q9NXB0 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
MKS1Q9NXB0 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC14.22□□□□□ -0.13
MKS1Q9NXB0 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms