Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
HMGB4Q8WW32 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB4Q8WW32 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
HMGB4Q8WW32 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC14.44□□□□□ -0.1
HMGB4Q8WW32 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
HMGB4Q8WW32 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB4Q8WW32 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
HMGB4Q8WW32 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB4Q8WW32 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB4Q8WW32 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.44□□□□□ -0.1
HMGB4Q8WW32 AC097376.2-205ENST00000610159 5334 ntBASIC14.44□□□□□ -0.1
HMGB4Q8WW32 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
HMGB4Q8WW32 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 LINC01815-202ENST00000641468 1409 ntBASIC14.43□□□□□ -0.1
HMGB4Q8WW32 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 AC084752.1-201ENST00000509766 622 ntBASIC14.43□□□□□ -0.1
HMGB4Q8WW32 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 OR5BD1P-201ENST00000532527 817 ntBASIC14.43□□□□□ -0.1
HMGB4Q8WW32 ELP5-212ENST00000574255 671 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 MIR5196-201ENST00000578146 115 ntBASIC14.43□□□□□ -0.1
HMGB4Q8WW32 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 AC018529.2-202ENST00000611482 3087 ntBASIC14.43□□□□□ -0.1
HMGB4Q8WW32 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 AC013268.4-201ENST00000637413 2228 ntBASIC14.43□□□□□ -0.1
HMGB4Q8WW32 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 LAP3P2-201ENST00000454686 1454 ntBASIC14.43□□□□□ -0.1
HMGB4Q8WW32 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 LINC00528-201ENST00000600723 2160 ntBASIC14.43□□□□□ -0.1
HMGB4Q8WW32 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC14.43□□□□□ -0.1
HMGB4Q8WW32 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 AGGF1P1-201ENST00000509500 2073 ntBASIC14.42□□□□□ -0.1
HMGB4Q8WW32 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 SAT1-201ENST00000379251 801 ntTSL 2 BASIC14.42□□□□□ -0.1
HMGB4Q8WW32 SAT1-202ENST00000379253 909 ntTSL 2 BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms