Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC010234.1-201ENST00000494599 870 ntBASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 CICP24-201ENST00000605464 2705 ntBASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NPAS3Q8IXF0 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 AC067931.2-201ENST00000623655 2003 ntBASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 MTND4LP12-201ENST00000448237 295 ntBASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 SCARNA12-201ENST00000459155 270 ntBASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 AP003400.6-201ENST00000624698 740 ntBASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 AL451007.2-201ENST00000632004 563 ntBASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NPAS3Q8IXF0 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
NPAS3Q8IXF0 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.83□□□□□ -0.03
NPAS3Q8IXF0 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
NPAS3Q8IXF0 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.83□□□□□ -0.03
NPAS3Q8IXF0 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 GCSHP3-201ENST00000431120 391 ntBASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 PSMD4P1-201ENST00000433951 1109 ntBASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 AC024293.1-201ENST00000467930 498 ntBASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 AC093909.3-201ENST00000504783 336 ntBASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 NSD1-211ENST00000511258 809 ntTSL 3 BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 AL022344.2-201ENST00000568976 968 ntBASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 AL021707.6-201ENST00000609212 491 ntBASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.83□□□□□ -0.04
NPAS3Q8IXF0 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms