Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC12.91□□□□□ -0.34
H3F3AP84243 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
H3F3AP84243 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC12.91□□□□□ -0.34
H3F3AP84243 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC12.91□□□□□ -0.34
H3F3AP84243 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
H3F3AP84243 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
H3F3AP84243 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC12.91□□□□□ -0.34
H3F3AP84243 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
H3F3AP84243 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC12.91□□□□□ -0.34
H3F3AP84243 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC12.91□□□□□ -0.34
H3F3AP84243 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC12.91□□□□□ -0.34
H3F3AP84243 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 OARD1-212ENST00000482515 832 ntTSL 2 BASIC12.91□□□□□ -0.34
H3F3AP84243 AP001258.2-201ENST00000529891 490 ntBASIC12.91□□□□□ -0.34
H3F3AP84243 SYT17-208ENST00000568433 812 ntTSL 3 BASIC12.91□□□□□ -0.34
H3F3AP84243 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC12.91□□□□□ -0.34
H3F3AP84243 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC12.91□□□□□ -0.34
H3F3AP84243 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
H3F3AP84243 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC12.91□□□□□ -0.34
H3F3AP84243 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC12.91□□□□□ -0.34
H3F3AP84243 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC12.91□□□□□ -0.34
H3F3AP84243 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
H3F3AP84243 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
H3F3AP84243 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
H3F3AP84243 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC12.91□□□□□ -0.34
H3F3AP84243 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
H3F3AP84243 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
H3F3AP84243 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC12.9□□□□□ -0.34
H3F3AP84243 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC12.9□□□□□ -0.34
H3F3AP84243 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
H3F3AP84243 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC12.9□□□□□ -0.34
H3F3AP84243 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
H3F3AP84243 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC12.9□□□□□ -0.34
H3F3AP84243 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC12.9□□□□□ -0.34
H3F3AP84243 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC12.9□□□□□ -0.34
H3F3AP84243 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC12.9□□□□□ -0.34
H3F3AP84243 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
H3F3AP84243 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC12.9□□□□□ -0.34
H3F3AP84243 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC12.9□□□□□ -0.34
H3F3AP84243 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
H3F3AP84243 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC12.9□□□□□ -0.34
H3F3AP84243 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 ZNF767P-206ENST00000513792 565 ntBASIC12.9□□□□□ -0.34
H3F3AP84243 PACS1-203ENST00000524815 628 ntTSL 4 BASIC12.9□□□□□ -0.34
H3F3AP84243 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC12.9□□□□□ -0.34
H3F3AP84243 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC12.9□□□□□ -0.34
H3F3AP84243 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC12.9□□□□□ -0.34
H3F3AP84243 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
H3F3AP84243 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC12.9□□□□□ -0.34
H3F3AP84243 KLK3-207ENST00000595952 969 ntTSL 3 BASIC12.9□□□□□ -0.34
H3F3AP84243 KC6-205ENST00000599934 556 ntTSL 4 BASIC12.9□□□□□ -0.34
H3F3AP84243 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC12.9□□□□□ -0.34
H3F3AP84243 AL451050.2-201ENST00000606967 682 ntBASIC12.9□□□□□ -0.34
H3F3AP84243 MIR6799-201ENST00000620297 69 ntBASIC12.9□□□□□ -0.34
H3F3AP84243 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
H3F3AP84243 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
H3F3AP84243 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms