Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC11.72□□□□□ -0.53
LMO4P61968 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 ADK-205ENST00000539909 1866 ntTSL 2 BASIC11.72□□□□□ -0.53
LMO4P61968 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
LMO4P61968 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
LMO4P61968 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
LMO4P61968 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
LMO4P61968 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC11.72□□□□□ -0.53
LMO4P61968 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
LMO4P61968 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC11.72□□□□□ -0.53
LMO4P61968 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC11.72□□□□□ -0.53
LMO4P61968 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC11.72□□□□□ -0.53
LMO4P61968 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC11.72□□□□□ -0.53
LMO4P61968 RGS5-216ENST00000449680 788 ntTSL 3 BASIC11.72□□□□□ -0.53
LMO4P61968 RN7SL818P-201ENST00000485099 259 ntBASIC11.72□□□□□ -0.53
LMO4P61968 RN7SL767P-201ENST00000493013 295 ntBASIC11.72□□□□□ -0.53
LMO4P61968 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC11.72□□□□□ -0.53
LMO4P61968 GOLGA2P8-201ENST00000505201 779 ntBASIC11.72□□□□□ -0.53
LMO4P61968 SLC25A15P3-201ENST00000505530 290 ntBASIC11.72□□□□□ -0.53
LMO4P61968 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC11.72□□□□□ -0.53
LMO4P61968 RN7SL357P-201ENST00000581065 298 ntBASIC11.72□□□□□ -0.53
LMO4P61968 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC11.72□□□□□ -0.53
LMO4P61968 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC11.72□□□□□ -0.53
LMO4P61968 RN7SL725P-201ENST00000606439 259 ntBASIC11.72□□□□□ -0.53
LMO4P61968 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC11.72□□□□□ -0.53
LMO4P61968 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC11.72□□□□□ -0.53
LMO4P61968 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC11.72□□□□□ -0.53
LMO4P61968 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC11.72□□□□□ -0.53
LMO4P61968 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
LMO4P61968 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC11.72□□□□□ -0.53
LMO4P61968 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC11.72□□□□□ -0.53
LMO4P61968 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
LMO4P61968 AC140479.7-201ENST00000636301 2332 ntBASIC11.71□□□□□ -0.53
LMO4P61968 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
LMO4P61968 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC11.71□□□□□ -0.53
LMO4P61968 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC11.71□□□□□ -0.53
LMO4P61968 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC11.71□□□□□ -0.53
LMO4P61968 CYP51A1P3-201ENST00000400072 1428 ntBASIC11.71□□□□□ -0.53
LMO4P61968 KRT8P18-201ENST00000413425 1445 ntBASIC11.71□□□□□ -0.53
LMO4P61968 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
LMO4P61968 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
LMO4P61968 AL390755.1-201ENST00000623716 2027 ntBASIC11.71□□□□□ -0.53
LMO4P61968 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC11.71□□□□□ -0.53
LMO4P61968 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC11.71□□□□□ -0.53
LMO4P61968 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
LMO4P61968 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 BAK1P1-201ENST00000317045 636 ntBASIC11.71□□□□□ -0.53
LMO4P61968 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 USP17L6P-201ENST00000382470 1197 ntBASIC11.71□□□□□ -0.53
LMO4P61968 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 HMGA1P1-201ENST00000415560 1062 ntBASIC11.71□□□□□ -0.53
LMO4P61968 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC11.71□□□□□ -0.53
LMO4P61968 RN7SL564P-201ENST00000496309 250 ntBASIC11.71□□□□□ -0.53
LMO4P61968 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC11.71□□□□□ -0.53
LMO4P61968 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC11.71□□□□□ -0.53
LMO4P61968 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC11.71□□□□□ -0.53
LMO4P61968 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC11.71□□□□□ -0.53
LMO4P61968 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC11.71□□□□□ -0.53
LMO4P61968 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC11.71□□□□□ -0.53
LMO4P61968 GAS7-216ENST00000583882 553 ntTSL 5 BASIC11.71□□□□□ -0.53
LMO4P61968 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC11.71□□□□□ -0.53
LMO4P61968 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC11.71□□□□□ -0.53
LMO4P61968 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
LMO4P61968 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
LMO4P61968 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.54
LMO4P61968 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC11.71□□□□□ -0.54
LMO4P61968 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms