Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
BRCA1P38398 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BRCA1P38398 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.79■□□□□ 0.28
BRCA1P38398 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC16.79■□□□□ 0.28
BRCA1P38398 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
BRCA1P38398 AC245128.1-201ENST00000400864 1294 ntTSL 5 BASIC16.79■□□□□ 0.28
BRCA1P38398 MB-204ENST00000401702 1043 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
BRCA1P38398 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
BRCA1P38398 AL133351.2-201ENST00000437718 484 ntTSL 2 BASIC16.79■□□□□ 0.28
BRCA1P38398 TPT1P11-201ENST00000458482 498 ntBASIC16.79■□□□□ 0.28
BRCA1P38398 SOX2-OT-203ENST00000466034 926 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
BRCA1P38398 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC16.79■□□□□ 0.28
BRCA1P38398 ZNF268-208ENST00000539248 759 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
BRCA1P38398 ZNF268-212ENST00000542711 861 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
BRCA1P38398 LINC02352-201ENST00000557928 468 ntTSL 5 BASIC16.79■□□□□ 0.28
BRCA1P38398 TTC39A-AS1-201ENST00000564479 812 ntTSL 3 BASIC16.79■□□□□ 0.28
BRCA1P38398 NAT9-204ENST00000578822 839 ntTSL 3 BASIC16.79■□□□□ 0.28
BRCA1P38398 SOX2-OT-221ENST00000594942 675 ntTSL 5 BASIC16.79■□□□□ 0.28
BRCA1P38398 AC022382.1-201ENST00000602768 336 ntBASIC16.79■□□□□ 0.28
BRCA1P38398 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC16.79■□□□□ 0.28
BRCA1P38398 AC137723.2-201ENST00000623540 398 ntBASIC16.79■□□□□ 0.28
BRCA1P38398 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
BRCA1P38398 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
BRCA1P38398 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
BRCA1P38398 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.79■□□□□ 0.28
BRCA1P38398 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.79■□□□□ 0.28
BRCA1P38398 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BRCA1P38398 AC013268.4-201ENST00000637413 2228 ntBASIC16.79■□□□□ 0.28
BRCA1P38398 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BRCA1P38398 TCAF2P1-201ENST00000291129 2421 ntBASIC16.79■□□□□ 0.28
BRCA1P38398 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BRCA1P38398 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
BRCA1P38398 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
BRCA1P38398 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC16.79■□□□□ 0.28
BRCA1P38398 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.78■□□□□ 0.28
BRCA1P38398 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRCA1P38398 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.78■□□□□ 0.28
BRCA1P38398 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
BRCA1P38398 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRCA1P38398 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
BRCA1P38398 AP001331.1-201ENST00000413008 1015 ntBASIC16.78■□□□□ 0.28
BRCA1P38398 RPL3P9-201ENST00000463217 1183 ntBASIC16.78■□□□□ 0.28
BRCA1P38398 RN7SL794P-201ENST00000469816 280 ntBASIC16.78■□□□□ 0.28
BRCA1P38398 MTHFD2P7-201ENST00000483867 983 ntBASIC16.78■□□□□ 0.28
BRCA1P38398 CCNL2P1-201ENST00000512846 969 ntBASIC16.78■□□□□ 0.28
BRCA1P38398 AC127002.1-201ENST00000619123 455 ntBASIC16.78■□□□□ 0.28
BRCA1P38398 AC116631.1-201ENST00000640685 576 ntTSL 5 BASIC16.78■□□□□ 0.28
BRCA1P38398 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRCA1P38398 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRCA1P38398 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
BRCA1P38398 DOC2GP-204ENST00000639052 2548 ntBASIC16.78■□□□□ 0.28
BRCA1P38398 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
BRCA1P38398 AJ011931.1-201ENST00000618749 2492 ntBASIC16.78■□□□□ 0.28
BRCA1P38398 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRCA1P38398 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRCA1P38398 TUBB4AP1-201ENST00000450755 1325 ntBASIC16.78■□□□□ 0.28
BRCA1P38398 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC16.78■□□□□ 0.28
BRCA1P38398 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
BRCA1P38398 MIR193A-201ENST00000384882 88 ntBASIC16.78■□□□□ 0.28
BRCA1P38398 PPP1R2P10-201ENST00000393023 595 ntBASIC16.78■□□□□ 0.28
BRCA1P38398 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC16.78■□□□□ 0.28
BRCA1P38398 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC16.78■□□□□ 0.28
BRCA1P38398 RN7SL646P-201ENST00000492969 297 ntBASIC16.78■□□□□ 0.28
BRCA1P38398 RN7SL87P-201ENST00000497657 288 ntBASIC16.78■□□□□ 0.28
BRCA1P38398 AP001102.1-201ENST00000528959 409 ntBASIC16.78■□□□□ 0.28
BRCA1P38398 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC16.78■□□□□ 0.28
BRCA1P38398 AC006504.5-210ENST00000585827 539 ntTSL 4 BASIC16.78■□□□□ 0.28
BRCA1P38398 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC16.78■□□□□ 0.28
BRCA1P38398 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC16.78■□□□□ 0.28
BRCA1P38398 PDZRN3-AS1-203ENST00000608743 780 ntTSL 5 BASIC16.78■□□□□ 0.28
BRCA1P38398 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.77■□□□□ 0.28
BRCA1P38398 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.77■□□□□ 0.28
BRCA1P38398 CYP2B6-202ENST00000593831 1426 ntTSL 2 BASIC16.77■□□□□ 0.28
BRCA1P38398 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRCA1P38398 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC16.77■□□□□ 0.28
BRCA1P38398 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC16.77■□□□□ 0.28
BRCA1P38398 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRCA1P38398 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRCA1P38398 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
BRCA1P38398 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRCA1P38398 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRCA1P38398 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC16.77■□□□□ 0.28
BRCA1P38398 TUBB8P4-201ENST00000511806 1324 ntBASIC16.77■□□□□ 0.28
BRCA1P38398 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
BRCA1P38398 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
BRCA1P38398 AC006486.2-201ENST00000624246 2199 ntBASIC16.77■□□□□ 0.28
BRCA1P38398 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRCA1P38398 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRCA1P38398 CNBP-207ENST00000502976 1626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
BRCA1P38398 HRASLS2-201ENST00000255695 742 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
BRCA1P38398 HNRNPABP1-201ENST00000406003 734 ntBASIC16.77■□□□□ 0.27
BRCA1P38398 PDLIM2-212ENST00000443561 701 ntTSL 2 BASIC16.77■□□□□ 0.27
BRCA1P38398 AC005077.3-201ENST00000449614 213 ntBASIC16.77■□□□□ 0.27
BRCA1P38398 RN7SL22P-201ENST00000471800 269 ntBASIC16.77■□□□□ 0.27
BRCA1P38398 MRPL51-205ENST00000543164 814 ntTSL 2 BASIC16.77■□□□□ 0.27
BRCA1P38398 MRPL51-206ENST00000543703 441 ntTSL 3 BASIC16.77■□□□□ 0.27
BRCA1P38398 CR936218.2-201ENST00000574252 759 ntTSL 3 BASIC16.77■□□□□ 0.27
BRCA1P38398 TMEM230-211ENST00000615008 594 ntTSL 4 BASIC16.77■□□□□ 0.27
BRCA1P38398 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.27
BRCA1P38398 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms