Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 KRT8P42-201ENST00000405771 1399 ntBASIC16.42■□□□□ 0.22
SCN4AP35499 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
SCN4AP35499 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCN4AP35499 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC16.41■□□□□ 0.22
SCN4AP35499 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SCN4AP35499 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.41■□□□□ 0.22
SCN4AP35499 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
SCN4AP35499 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
SCN4AP35499 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
SCN4AP35499 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 KLK8-203ENST00000347619 555 ntTSL 2 BASIC16.41■□□□□ 0.22
SCN4AP35499 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC16.41■□□□□ 0.22
SCN4AP35499 MKNK1-205ENST00000428112 1270 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
SCN4AP35499 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC16.41■□□□□ 0.22
SCN4AP35499 AC099343.1-201ENST00000513481 609 ntBASIC16.41■□□□□ 0.22
SCN4AP35499 METTL7AP1-201ENST00000547343 496 ntBASIC16.41■□□□□ 0.22
SCN4AP35499 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC16.41■□□□□ 0.22
SCN4AP35499 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
SCN4AP35499 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16.41■□□□□ 0.22
SCN4AP35499 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
SCN4AP35499 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC16.41■□□□□ 0.22
SCN4AP35499 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.41■□□□□ 0.22
SCN4AP35499 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC16.41■□□□□ 0.22
SCN4AP35499 LARP4-207ENST00000518561 1578 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 AC126177.1-201ENST00000547829 2218 ntBASIC16.41■□□□□ 0.22
SCN4AP35499 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SCN4AP35499 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC16.4■□□□□ 0.22
SCN4AP35499 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SCN4AP35499 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SCN4AP35499 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SCN4AP35499 CIDEC-204ENST00000430427 877 ntTSL 3 BASIC16.4■□□□□ 0.22
SCN4AP35499 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
SCN4AP35499 HNRNPA1P73-201ENST00000446472 928 ntBASIC16.4■□□□□ 0.22
SCN4AP35499 RPL29P2-202ENST00000498671 657 ntBASIC16.4■□□□□ 0.22
SCN4AP35499 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SCN4AP35499 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC16.4■□□□□ 0.22
SCN4AP35499 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SCN4AP35499 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC16.4■□□□□ 0.22
SCN4AP35499 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC16.4■□□□□ 0.22
SCN4AP35499 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.4■□□□□ 0.22
SCN4AP35499 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SCN4AP35499 LPGAT1-201ENST00000366996 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SCN4AP35499 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SCN4AP35499 KRT8P25-201ENST00000473150 1456 ntBASIC16.4■□□□□ 0.22
SCN4AP35499 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SCN4AP35499 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.4■□□□□ 0.22
SCN4AP35499 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.4■□□□□ 0.22
SCN4AP35499 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SCN4AP35499 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC16.4■□□□□ 0.22
SCN4AP35499 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.4■□□□□ 0.22
SCN4AP35499 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SCN4AP35499 DDC-204ENST00000426377 1700 ntTSL 3 BASIC16.4■□□□□ 0.22
SCN4AP35499 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SCN4AP35499 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.4■□□□□ 0.22
SCN4AP35499 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.4■□□□□ 0.22
SCN4AP35499 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SCN4AP35499 SRP9P1-201ENST00000445874 261 ntBASIC16.4■□□□□ 0.22
SCN4AP35499 RN7SL363P-201ENST00000482412 273 ntBASIC16.4■□□□□ 0.22
SCN4AP35499 CDHR4-205ENST00000487256 1017 ntTSL 5 BASIC16.4■□□□□ 0.22
SCN4AP35499 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SCN4AP35499 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC16.4■□□□□ 0.22
SCN4AP35499 FXYD4-204ENST00000616495 778 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SCN4AP35499 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SCN4AP35499 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.4■□□□□ 0.22
SCN4AP35499 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.4■□□□□ 0.22
SCN4AP35499 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SCN4AP35499 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SCN4AP35499 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SCN4AP35499 FAM45BP-202ENST00000592932 1624 ntBASIC16.4■□□□□ 0.22
SCN4AP35499 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
SCN4AP35499 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
SCN4AP35499 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.22
SCN4AP35499 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
SCN4AP35499 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
SCN4AP35499 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms