Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC14.73□□□□□ -0.05
COL9A1P20849 ASS1P2-201ENST00000439895 1223 ntBASIC14.73□□□□□ -0.05
COL9A1P20849 RGS5-216ENST00000449680 788 ntTSL 3 BASIC14.73□□□□□ -0.05
COL9A1P20849 ELL2P2-201ENST00000515135 694 ntBASIC14.73□□□□□ -0.05
COL9A1P20849 AC112694.1-202ENST00000540985 943 ntBASIC14.73□□□□□ -0.05
COL9A1P20849 MIR5193-201ENST00000584510 109 ntBASIC14.73□□□□□ -0.05
COL9A1P20849 AC020910.4-201ENST00000612269 540 ntBASIC14.73□□□□□ -0.05
COL9A1P20849 GGNBP1-204ENST00000613113 887 ntBASIC14.73□□□□□ -0.05
COL9A1P20849 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC14.73□□□□□ -0.05
COL9A1P20849 LINC00244-201ENST00000625073 613 ntBASIC14.73□□□□□ -0.05
COL9A1P20849 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC14.73□□□□□ -0.05
COL9A1P20849 AL590396.2-201ENST00000636511 1041 ntBASIC14.73□□□□□ -0.05
COL9A1P20849 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.73□□□□□ -0.05
COL9A1P20849 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
COL9A1P20849 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.73□□□□□ -0.05
COL9A1P20849 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.73□□□□□ -0.05
COL9A1P20849 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
COL9A1P20849 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC14.73□□□□□ -0.05
COL9A1P20849 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
COL9A1P20849 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL9A1P20849 FKBP4P8-201ENST00000610931 1369 ntBASIC14.73□□□□□ -0.05
COL9A1P20849 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
COL9A1P20849 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
COL9A1P20849 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.72□□□□□ -0.05
COL9A1P20849 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.72□□□□□ -0.05
COL9A1P20849 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
COL9A1P20849 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 RNU6-673P-201ENST00000365084 104 ntBASIC14.72□□□□□ -0.05
COL9A1P20849 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC14.72□□□□□ -0.05
COL9A1P20849 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
COL9A1P20849 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC14.72□□□□□ -0.05
COL9A1P20849 AL080243.1-201ENST00000423293 1060 ntBASIC14.72□□□□□ -0.05
COL9A1P20849 NRADDP-201ENST00000437305 691 ntBASIC14.72□□□□□ -0.05
COL9A1P20849 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC14.72□□□□□ -0.05
COL9A1P20849 AL353718.1-201ENST00000451028 517 ntBASIC14.72□□□□□ -0.05
COL9A1P20849 DUX4L50-201ENST00000455245 715 ntBASIC14.72□□□□□ -0.05
COL9A1P20849 TREX1-203ENST00000456089 629 ntTSL 3 BASIC14.72□□□□□ -0.05
COL9A1P20849 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC14.72□□□□□ -0.05
COL9A1P20849 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC14.72□□□□□ -0.05
COL9A1P20849 OSTCP1-202ENST00000522287 1195 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 AC003686.1-201ENST00000550956 1034 ntBASIC14.72□□□□□ -0.05
COL9A1P20849 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC14.72□□□□□ -0.05
COL9A1P20849 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC14.72□□□□□ -0.05
COL9A1P20849 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC14.72□□□□□ -0.05
COL9A1P20849 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC14.72□□□□□ -0.05
COL9A1P20849 AC245369.7-201ENST00000631386 350 ntBASIC14.72□□□□□ -0.05
COL9A1P20849 AL590556.2-202ENST00000636906 844 ntBASIC14.72□□□□□ -0.05
COL9A1P20849 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC14.72□□□□□ -0.05
COL9A1P20849 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.72□□□□□ -0.05
COL9A1P20849 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.72□□□□□ -0.05
COL9A1P20849 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 FUCA1P1-201ENST00000374476 1351 ntBASIC14.72□□□□□ -0.05
COL9A1P20849 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL9A1P20849 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
COL9A1P20849 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC14.71□□□□□ -0.05
COL9A1P20849 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC14.71□□□□□ -0.05
COL9A1P20849 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.71□□□□□ -0.05
COL9A1P20849 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms