Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 CRCP-204ENST00000398684 492 ntTSL 2 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 AC022217.1-201ENST00000521069 738 ntBASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 AC015802.1-201ENST00000588104 1449 ntBASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 TUBBP5-203ENST00000508529 1334 ntBASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 AP001267.2-201ENST00000532619 2086 ntBASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 AC011742.3-201ENST00000439053 820 ntBASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 ST13P19-201ENST00000442505 1124 ntBASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 AC125604.1-201ENST00000496255 707 ntBASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 AC100757.4-201ENST00000626934 759 ntBASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 AL359183.1-201ENST00000623796 2132 ntBASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM39Q9HCM9 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms