Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 USP17L6P-201ENST00000382470 1197 ntBASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 AC004945.1-201ENST00000416738 983 ntBASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 TDH-203ENST00000531764 1110 ntBASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 AC106820.3-201ENST00000561653 397 ntBASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 MIR5189-201ENST00000577370 114 ntBASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 SLC9A3P3-201ENST00000457608 2229 ntBASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 CELSR3-201ENST00000164024 11956 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 APP-205ENST00000358918 2366 ntTSL 5 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC12.69□□□□□ -0.38
CCDC54Q8NEL0 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 FAM157A-203ENST00000634862 6083 ntTSL 5 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 HSPA8P5-201ENST00000456928 2069 ntBASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 AC098614.1-201ENST00000368528 745 ntBASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 C2orf27AP3-201ENST00000434123 579 ntBASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 AL161932.2-201ENST00000435436 679 ntBASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 AC025279.2-201ENST00000569730 653 ntBASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 AL354718.3-201ENST00000616414 581 ntBASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 ETV2-208ENST00000621247 941 ntTSL 5 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 CR382287.1-201ENST00000623954 586 ntBASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 ACACA-237ENST00000616317 9961 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 HARS-202ENST00000415192 1401 ntTSL 2 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 ST8SIA1-203ENST00000396037 9714 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 NR3C2-203ENST00000358102 5893 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms