Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC12.11□□□□□ -0.47
HOXA1P49639 HNRNPA3P5-201ENST00000455201 833 ntBASIC12.11□□□□□ -0.47
HOXA1P49639 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC12.11□□□□□ -0.47
HOXA1P49639 BAD-207ENST00000544785 525 ntTSL 3 BASIC12.11□□□□□ -0.47
HOXA1P49639 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC12.11□□□□□ -0.47
HOXA1P49639 METTL23-205ENST00000588302 925 ntTSL 5 BASIC12.11□□□□□ -0.47
HOXA1P49639 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXA1P49639 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 5S_rRNA.22-201ENST00000614916 106 ntBASIC12.11□□□□□ -0.47
HOXA1P49639 Z92544.3-201ENST00000624747 417 ntBASIC12.11□□□□□ -0.47
HOXA1P49639 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC12.11□□□□□ -0.47
HOXA1P49639 ZNF646-202ENST00000394979 8118 ntAPPRIS ALT2 BASIC12.11□□□□□ -0.47
HOXA1P49639 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 CYP4F11-205ENST00000620614 2908 ntTSL 5 BASIC12.11□□□□□ -0.47
HOXA1P49639 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
HOXA1P49639 LSINCT5-201ENST00000626215 2647 ntBASIC12.11□□□□□ -0.47
HOXA1P49639 RBM19-201ENST00000261741 4194 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 FAM76A-204ENST00000373954 3567 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXA1P49639 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXA1P49639 AMT-239ENST00000636865 1914 ntTSL 5 BASIC12.11□□□□□ -0.47
HOXA1P49639 DGKD-202ENST00000409813 6228 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
HOXA1P49639 AOC2-202ENST00000452774 2572 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC12.11□□□□□ -0.47
HOXA1P49639 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HOXA1P49639 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC12.11□□□□□ -0.47
HOXA1P49639 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC12.1□□□□□ -0.47
HOXA1P49639 HOXB13-201ENST00000290295 3467 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 VAMP7-202ENST00000286448 2646 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 LINC00846-201ENST00000334165 1778 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXA1P49639 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
HOXA1P49639 REXO5-208ENST00000564274 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 KDM6A-214ENST00000621147 2876 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 FBXO32-203ENST00000517956 6744 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
HOXA1P49639 SYMPK-214ENST00000599814 6537 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXA1P49639 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
HOXA1P49639 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXA1P49639 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 SUN1-204ENST00000403868 978 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXA1P49639 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC12.1□□□□□ -0.47
HOXA1P49639 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXA1P49639 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
HOXA1P49639 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC12.1□□□□□ -0.47
HOXA1P49639 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC12.1□□□□□ -0.47
HOXA1P49639 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC12.1□□□□□ -0.47
HOXA1P49639 AL596442.2-201ENST00000610240 980 ntBASIC12.1□□□□□ -0.47
HOXA1P49639 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC12.1□□□□□ -0.47
HOXA1P49639 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC12.1□□□□□ -0.47
HOXA1P49639 LINC00477-201ENST00000483544 1710 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXA1P49639 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 CFAP65-208ENST00000453220 5877 ntAPPRIS P4 TSL 5 BASIC12.1□□□□□ -0.47
HOXA1P49639 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC12.1□□□□□ -0.47
HOXA1P49639 TP73-213ENST00000604479 1623 ntTSL 5 BASIC12.1□□□□□ -0.47
HOXA1P49639 ZNF286B-205ENST00000545289 5328 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
HOXA1P49639 SLC26A6-204ENST00000383733 2545 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 LINC00893-215ENST00000618757 2347 ntTSL 2 BASIC12.1□□□□□ -0.47
HOXA1P49639 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 TOP3B-202ENST00000398793 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HOXA1P49639 AMER3-202ENST00000423981 6172 ntAPPRIS P1 TSL 4 BASIC12.1□□□□□ -0.47
HOXA1P49639 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC12.1□□□□□ -0.47
HOXA1P49639 SPINT1-201ENST00000344051 3056 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 ASCC3-203ENST00000369143 3433 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 ARL13B-210ENST00000535334 3906 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 TMPRSS13-201ENST00000430170 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
HOXA1P49639 CACNA1G-211ENST00000503485 6768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 PNPLA8-208ENST00000453144 3366 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms