Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
CX3CR1P49238 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CX3CR1P49238 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CX3CR1P49238 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC12.77□□□□□ -0.37
CX3CR1P49238 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 PTPA-215ENST00000432124 567 ntTSL 4 BASIC12.77□□□□□ -0.37
CX3CR1P49238 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC12.77□□□□□ -0.37
CX3CR1P49238 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC12.77□□□□□ -0.37
CX3CR1P49238 KRT90P-201ENST00000549264 1064 ntBASIC12.77□□□□□ -0.37
CX3CR1P49238 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC12.77□□□□□ -0.37
CX3CR1P49238 AL596325.1-201ENST00000563991 1082 ntBASIC12.77□□□□□ -0.37
CX3CR1P49238 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC12.77□□□□□ -0.37
CX3CR1P49238 AC073413.1-201ENST00000603927 732 ntBASIC12.77□□□□□ -0.37
CX3CR1P49238 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC12.77□□□□□ -0.37
CX3CR1P49238 AC006453.4-201ENST00000636949 1252 ntBASIC12.77□□□□□ -0.37
CX3CR1P49238 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC12.77□□□□□ -0.37
CX3CR1P49238 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
CX3CR1P49238 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.37
CX3CR1P49238 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
CX3CR1P49238 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC12.77□□□□□ -0.37
CX3CR1P49238 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CX3CR1P49238 AC027612.1-201ENST00000445234 2395 ntBASIC12.77□□□□□ -0.37
CX3CR1P49238 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC12.77□□□□□ -0.37
CX3CR1P49238 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
CX3CR1P49238 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
CX3CR1P49238 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC12.76□□□□□ -0.37
CX3CR1P49238 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
CX3CR1P49238 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC12.76□□□□□ -0.37
CX3CR1P49238 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
CX3CR1P49238 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
CX3CR1P49238 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 PPT1-213ENST00000641319 2388 ntBASIC12.76□□□□□ -0.37
CX3CR1P49238 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC12.76□□□□□ -0.37
CX3CR1P49238 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC12.76□□□□□ -0.37
CX3CR1P49238 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
CX3CR1P49238 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC12.76□□□□□ -0.37
CX3CR1P49238 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC12.76□□□□□ -0.37
CX3CR1P49238 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
CX3CR1P49238 AL035414.1-201ENST00000451327 857 ntBASIC12.76□□□□□ -0.37
CX3CR1P49238 AC007551.1-201ENST00000457394 519 ntBASIC12.76□□□□□ -0.37
CX3CR1P49238 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC12.76□□□□□ -0.37
CX3CR1P49238 AP005018.1-201ENST00000525475 301 ntBASIC12.76□□□□□ -0.37
CX3CR1P49238 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC12.76□□□□□ -0.37
CX3CR1P49238 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
CX3CR1P49238 APRT-204ENST00000563655 709 ntTSL 5 BASIC12.76□□□□□ -0.37
CX3CR1P49238 AC005586.2-201ENST00000563946 837 ntBASIC12.76□□□□□ -0.37
CX3CR1P49238 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC12.76□□□□□ -0.37
CX3CR1P49238 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC12.76□□□□□ -0.37
CX3CR1P49238 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC12.76□□□□□ -0.37
CX3CR1P49238 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 TUBB8P4-201ENST00000511806 1324 ntBASIC12.76□□□□□ -0.37
CX3CR1P49238 AC064801.2-201ENST00000625052 1303 ntBASIC12.76□□□□□ -0.37
CX3CR1P49238 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 HARS-202ENST00000415192 1401 ntTSL 2 BASIC12.76□□□□□ -0.37
CX3CR1P49238 CU639417.3-201ENST00000624240 1404 ntBASIC12.76□□□□□ -0.37
CX3CR1P49238 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
CX3CR1P49238 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CX3CR1P49238 SLC6A6P1-201ENST00000413933 1850 ntBASIC12.76□□□□□ -0.37
CX3CR1P49238 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC12.76□□□□□ -0.37
CX3CR1P49238 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms