Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC17.49■□□□□ 0.39
COL5A3P25940 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A3P25940 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A3P25940 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A3P25940 AC011477.7-201ENST00000617163 1440 ntBASIC17.49■□□□□ 0.39
COL5A3P25940 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
COL5A3P25940 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL5A3P25940 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL5A3P25940 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC17.48■□□□□ 0.39
COL5A3P25940 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC17.48■□□□□ 0.39
COL5A3P25940 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 GH1-203ENST00000351388 685 ntTSL 2 BASIC17.48■□□□□ 0.39
COL5A3P25940 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC17.48■□□□□ 0.39
COL5A3P25940 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC17.48■□□□□ 0.39
COL5A3P25940 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 CCND3P1-201ENST00000438347 580 ntBASIC17.48■□□□□ 0.39
COL5A3P25940 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC17.48■□□□□ 0.39
COL5A3P25940 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC17.48■□□□□ 0.39
COL5A3P25940 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC17.48■□□□□ 0.39
COL5A3P25940 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC17.48■□□□□ 0.39
COL5A3P25940 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
COL5A3P25940 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL5A3P25940 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC17.48■□□□□ 0.39
COL5A3P25940 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
COL5A3P25940 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL5A3P25940 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL5A3P25940 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
COL5A3P25940 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
COL5A3P25940 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL5A3P25940 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A3P25940 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
COL5A3P25940 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC17.47■□□□□ 0.39
COL5A3P25940 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC17.47■□□□□ 0.39
COL5A3P25940 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC17.47■□□□□ 0.39
COL5A3P25940 BCL2L11-203ENST00000357757 947 ntTSL 5 BASIC17.47■□□□□ 0.39
COL5A3P25940 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
COL5A3P25940 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 AL773545.2-201ENST00000442149 472 ntBASIC17.47■□□□□ 0.39
COL5A3P25940 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC17.47■□□□□ 0.39
COL5A3P25940 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC17.47■□□□□ 0.39
COL5A3P25940 KIAA1191-210ENST00000510164 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC17.47■□□□□ 0.39
COL5A3P25940 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC17.47■□□□□ 0.39
COL5A3P25940 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC17.47■□□□□ 0.39
COL5A3P25940 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC17.47■□□□□ 0.39
COL5A3P25940 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC17.47■□□□□ 0.39
COL5A3P25940 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC17.47■□□□□ 0.39
COL5A3P25940 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
COL5A3P25940 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC17.47■□□□□ 0.39
COL5A3P25940 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
COL5A3P25940 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 PTN-202ENST00000393083 1599 ntTSL 5 BASIC17.47■□□□□ 0.39
COL5A3P25940 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC17.47■□□□□ 0.39
COL5A3P25940 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC17.47■□□□□ 0.39
COL5A3P25940 AC015818.1-201ENST00000451011 244 ntBASIC17.47■□□□□ 0.39
COL5A3P25940 DPY19L2P4-201ENST00000479881 442 ntBASIC17.47■□□□□ 0.39
COL5A3P25940 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 AC142086.5-202ENST00000562500 217 ntBASIC17.47■□□□□ 0.39
COL5A3P25940 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC17.47■□□□□ 0.39
COL5A3P25940 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC17.47■□□□□ 0.39
COL5A3P25940 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A3P25940 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC17.47■□□□□ 0.39
COL5A3P25940 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
COL5A3P25940 AC004466.2-201ENST00000614749 516 ntBASIC17.47■□□□□ 0.39
COL5A3P25940 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A3P25940 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms