Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.32□□□□□ -0.12
COL6A2P12110 AC006453.4-201ENST00000636949 1252 ntBASIC14.32□□□□□ -0.12
COL6A2P12110 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
COL6A2P12110 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A2P12110 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A2P12110 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
COL6A2P12110 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A2P12110 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A2P12110 NUTM2HP-201ENST00000442076 2498 ntBASIC14.32□□□□□ -0.12
COL6A2P12110 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A2P12110 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
COL6A2P12110 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC14.31□□□□□ -0.12
COL6A2P12110 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC14.31□□□□□ -0.12
COL6A2P12110 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC14.31□□□□□ -0.12
COL6A2P12110 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.31□□□□□ -0.12
COL6A2P12110 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.31□□□□□ -0.12
COL6A2P12110 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.31□□□□□ -0.12
COL6A2P12110 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.31□□□□□ -0.12
COL6A2P12110 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC14.31□□□□□ -0.12
COL6A2P12110 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.31□□□□□ -0.12
COL6A2P12110 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.31□□□□□ -0.12
COL6A2P12110 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.31□□□□□ -0.12
COL6A2P12110 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.31□□□□□ -0.12
COL6A2P12110 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC14.31□□□□□ -0.12
COL6A2P12110 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.31□□□□□ -0.12
COL6A2P12110 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
COL6A2P12110 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
COL6A2P12110 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.31□□□□□ -0.12
COL6A2P12110 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.31□□□□□ -0.12
COL6A2P12110 SPCS2P1-201ENST00000561636 679 ntBASIC14.31□□□□□ -0.12
COL6A2P12110 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.31□□□□□ -0.12
COL6A2P12110 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.31□□□□□ -0.12
COL6A2P12110 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.31□□□□□ -0.12
COL6A2P12110 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14.31□□□□□ -0.12
COL6A2P12110 MARK2P9-201ENST00000430958 1727 ntBASIC14.31□□□□□ -0.12
COL6A2P12110 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC14.31□□□□□ -0.12
COL6A2P12110 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
COL6A2P12110 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
COL6A2P12110 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC14.31□□□□□ -0.12
COL6A2P12110 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC14.31□□□□□ -0.12
COL6A2P12110 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC14.31□□□□□ -0.12
COL6A2P12110 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC14.31□□□□□ -0.12
COL6A2P12110 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL6A2P12110 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A2P12110 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A2P12110 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A2P12110 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A2P12110 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A2P12110 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A2P12110 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A2P12110 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A2P12110 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A2P12110 AC138969.2-201ENST00000532739 9932 ntBASIC14.3□□□□□ -0.12
COL6A2P12110 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A2P12110 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
COL6A2P12110 AC098614.1-201ENST00000368528 745 ntBASIC14.3□□□□□ -0.12
COL6A2P12110 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.3□□□□□ -0.12
COL6A2P12110 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A2P12110 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
COL6A2P12110 AC007389.4-201ENST00000454674 793 ntBASIC14.3□□□□□ -0.12
COL6A2P12110 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.3□□□□□ -0.12
COL6A2P12110 COX5BP1-201ENST00000507622 393 ntBASIC14.3□□□□□ -0.12
COL6A2P12110 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
COL6A2P12110 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC14.3□□□□□ -0.12
COL6A2P12110 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.3□□□□□ -0.12
COL6A2P12110 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms