Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXD4P09016 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXD4P09016 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXD4P09016 CICP16-201ENST00000502609 2813 ntBASIC13.2□□□□□ -0.3
HOXD4P09016 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 AL359881.3-201ENST00000602640 1721 ntBASIC13.2□□□□□ -0.3
HOXD4P09016 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
HOXD4P09016 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
HOXD4P09016 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HOXD4P09016 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXD4P09016 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC13.2□□□□□ -0.3
HOXD4P09016 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
HOXD4P09016 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXD4P09016 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
HOXD4P09016 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC13.2□□□□□ -0.3
HOXD4P09016 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC13.2□□□□□ -0.3
HOXD4P09016 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXD4P09016 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC13.2□□□□□ -0.3
HOXD4P09016 FGFR3P5-201ENST00000564496 886 ntBASIC13.2□□□□□ -0.3
HOXD4P09016 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXD4P09016 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC13.2□□□□□ -0.3
HOXD4P09016 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.2□□□□□ -0.3
HOXD4P09016 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 AC244394.1-201ENST00000435000 1665 ntBASIC13.2□□□□□ -0.3
HOXD4P09016 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HOXD4P09016 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXD4P09016 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXD4P09016 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.2□□□□□ -0.3
HOXD4P09016 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HOXD4P09016 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC13.2□□□□□ -0.3
HOXD4P09016 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 AC131902.2-201ENST00000566892 2172 ntBASIC13.2□□□□□ -0.3
HOXD4P09016 AC112693.3-201ENST00000624819 1983 ntBASIC13.2□□□□□ -0.3
HOXD4P09016 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
HOXD4P09016 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.19□□□□□ -0.3
HOXD4P09016 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.19□□□□□ -0.3
HOXD4P09016 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD4P09016 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 AMT-221ENST00000538581 2038 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD4P09016 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HOXD4P09016 AC105206.1-202ENST00000314927 2368 ntBASIC13.19□□□□□ -0.3
HOXD4P09016 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
HOXD4P09016 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD4P09016 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 MIR33B-201ENST00000385104 96 ntBASIC13.19□□□□□ -0.3
HOXD4P09016 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
HOXD4P09016 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC13.19□□□□□ -0.3
HOXD4P09016 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.19□□□□□ -0.3
HOXD4P09016 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13.19□□□□□ -0.3
HOXD4P09016 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC13.19□□□□□ -0.3
HOXD4P09016 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC13.19□□□□□ -0.3
HOXD4P09016 POU5F1P2-201ENST00000521750 823 ntBASIC13.19□□□□□ -0.3
HOXD4P09016 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD4P09016 AC009779.1-201ENST00000551138 283 ntBASIC13.19□□□□□ -0.3
HOXD4P09016 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC13.19□□□□□ -0.3
HOXD4P09016 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.19□□□□□ -0.3
HOXD4P09016 AC079336.7-201ENST00000623428 1078 ntBASIC13.19□□□□□ -0.3
HOXD4P09016 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.19□□□□□ -0.3
HOXD4P09016 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
HOXD4P09016 C18orf15-201ENST00000623680 2534 ntBASIC13.19□□□□□ -0.3
HOXD4P09016 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD4P09016 AC023024.2-201ENST00000623561 1993 ntBASIC13.19□□□□□ -0.3
HOXD4P09016 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
HOXD4P09016 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HOXD4P09016 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC13.19□□□□□ -0.3
HOXD4P09016 MIR600HG-201ENST00000449175 5984 ntBASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms