Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 IKZF1-203ENST00000346667 5376 ntTSL 5 BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CTDP1Q9Y5B0 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 DUTP3-201ENST00000450025 415 ntBASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CTDP1Q9Y5B0 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
CTDP1Q9Y5B0 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
CTDP1Q9Y5B0 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.71■□□□□ 0.26
CTDP1Q9Y5B0 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.26
CTDP1Q9Y5B0 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CTDP1Q9Y5B0 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 ST20-AS1-201ENST00000560255 4223 ntBASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 INTS4P1-203ENST00000641008 3683 ntBASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 RPS9P1-201ENST00000419943 583 ntBASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 AC098935.1-201ENST00000446057 611 ntBASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 RN7SL277P-201ENST00000481521 288 ntBASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 AL022334.2-201ENST00000610000 484 ntBASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 DBET-201ENST00000630918 3363 ntBASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC16.7■□□□□ 0.26
CTDP1Q9Y5B0 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms