Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 AC097359.2-201ENST00000604992 2389 ntBASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 AC232323.1-201ENST00000540724 2099 ntBASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 AC095040.1-201ENST00000513286 675 ntBASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 AC020904.3-201ENST00000624199 442 ntBASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 AP000769.1-203ENST00000637245 208 ntBASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 GEMIN8P4-201ENST00000380526 729 ntBASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 AC023141.7-201ENST00000430646 407 ntBASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 PFN2-212ENST00000490975 858 ntTSL 4 BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 KNOP1P1-201ENST00000542108 989 ntBASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 NAV1-210ENST00000593583 726 ntBASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC27.05■■□□□ 1.92
SHROOM4Q9ULL8 BANP-201ENST00000286122 2368 ntTSL 5 BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 GSN-203ENST00000373808 2664 ntTSL 2 BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 AC106827.1-201ENST00000366454 431 ntBASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 AC092862.1-201ENST00000541534 533 ntBASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 LINC00244-201ENST00000625073 613 ntBASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 AC006372.4-201ENST00000624122 1543 ntBASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 FUCA1P1-201ENST00000374476 1351 ntBASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
SHROOM4Q9ULL8 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 LAP3P2-201ENST00000454686 1454 ntBASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 PMEL-214ENST00000550447 901 ntTSL 3 BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 AL590235.1-201ENST00000564650 861 ntBASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 CR392039.1-201ENST00000623217 204 ntBASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 HELLS-212ENST00000630929 400 ntTSL 5 BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC27.03■■□□□ 1.92
SHROOM4Q9ULL8 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC27.02■■□□□ 1.92
SHROOM4Q9ULL8 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC27.02■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms