Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 GOLGA8DP-202ENST00000341390 2184 ntBASIC13.3□□□□□ -0.28
LRFN1Q9P244 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 MBP-201ENST00000354542 575 ntTSL 2 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 GGCT-203ENST00000409144 836 ntTSL 2 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 AC026320.2-201ENST00000434379 478 ntBASIC13.3□□□□□ -0.28
LRFN1Q9P244 ST13P19-201ENST00000442505 1124 ntBASIC13.3□□□□□ -0.28
LRFN1Q9P244 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 FTLP1-201ENST00000449155 526 ntBASIC13.3□□□□□ -0.28
LRFN1Q9P244 CEP164P1-201ENST00000455142 418 ntBASIC13.3□□□□□ -0.28
LRFN1Q9P244 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 STUB1-204ENST00000564370 875 ntTSL 2 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 AL109837.1-201ENST00000603272 613 ntBASIC13.3□□□□□ -0.28
LRFN1Q9P244 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 FAM90A2P-201ENST00000511144 1395 ntBASIC13.3□□□□□ -0.28
LRFN1Q9P244 FAM90A25P-201ENST00000528404 1395 ntBASIC13.3□□□□□ -0.28
LRFN1Q9P244 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 FGD5P1-202ENST00000614866 2498 ntBASIC13.3□□□□□ -0.28
LRFN1Q9P244 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
LRFN1Q9P244 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LRFN1Q9P244 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LRFN1Q9P244 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LRFN1Q9P244 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
LRFN1Q9P244 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
LRFN1Q9P244 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
LRFN1Q9P244 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.29□□□□□ -0.28
LRFN1Q9P244 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LRFN1Q9P244 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
LRFN1Q9P244 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
LRFN1Q9P244 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
LRFN1Q9P244 AL354702.1-201ENST00000442006 1960 ntBASIC13.29□□□□□ -0.28
LRFN1Q9P244 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.29□□□□□ -0.28
LRFN1Q9P244 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms