Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 FNTAP2-201ENST00000430308 634 ntBASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 SYT17-208ENST00000568433 812 ntTSL 3 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 AL132994.2-201ENST00000603120 687 ntBASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM39Q9HCM9 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 AL008707.1-201ENST00000422498 534 ntBASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 AC016700.1-201ENST00000429424 312 ntBASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 OARD1-204ENST00000464633 717 ntTSL 2 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 NOP2-211ENST00000540228 668 ntTSL 2 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 AC009779.1-201ENST00000551138 283 ntBASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 AC005586.2-201ENST00000563946 837 ntBASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
TRIM39Q9HCM9 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM39Q9HCM9 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms