Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 PPY2P-201ENST00000582808 702 ntBASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 AC027601.3-201ENST00000622907 509 ntBASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC17.32■□□□□ 0.36
UPF3BQ9BZI7 REXO1L6P-201ENST00000603433 1515 ntBASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 HNRNPA1P27-201ENST00000412087 955 ntBASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 PTPA-215ENST00000432124 567 ntTSL 4 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 HLA-DPB2-205ENST00000435074 1188 ntBASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 CHMP1AP1-201ENST00000445563 662 ntBASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 C2orf69P2-201ENST00000562032 1123 ntBASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 AL136301.1-201ENST00000615830 422 ntBASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 AC107918.4-201ENST00000641966 3141 ntBASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
UPF3BQ9BZI7 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms