Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 MX1-218ENST00000619682 1980 ntTSL 5 BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
PDLIM3Q53GG5 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 TMEM168-201ENST00000312814 7470 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 AC234644.1-201ENST00000406065 370 ntBASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 AL589987.1-201ENST00000453380 819 ntBASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 RN7SL769P-201ENST00000469386 295 ntBASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 AC022447.6-201ENST00000515522 438 ntBASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 AC092337.1-201ENST00000568699 1129 ntBASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 CASP16P-204ENST00000635032 809 ntBASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 CEP85L-203ENST00000368491 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
PDLIM3Q53GG5 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
PDLIM3Q53GG5 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
PDLIM3Q53GG5 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
PDLIM3Q53GG5 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
PDLIM3Q53GG5 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.47
PDLIM3Q53GG5 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
PDLIM3Q53GG5 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.47
PDLIM3Q53GG5 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
PDLIM3Q53GG5 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 MEX3B-202ENST00000558133 4333 ntBASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 CFAP65-208ENST00000453220 5877 ntAPPRIS P4 TSL 5 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 AGGF1P1-201ENST00000509500 2073 ntBASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 KIAA0513-201ENST00000258180 7404 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC12.14□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms