Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
PDX1P52945 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
PDX1P52945 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
PDX1P52945 FRMPD2B-201ENST00000431305 1347 ntBASIC14.08□□□□□ -0.16
PDX1P52945 AC074138.1-201ENST00000611182 1303 ntBASIC14.08□□□□□ -0.16
PDX1P52945 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PDX1P52945 AC026748.1-201ENST00000624349 3251 ntBASIC14.08□□□□□ -0.16
PDX1P52945 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDX1P52945 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PDX1P52945 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
PDX1P52945 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.08□□□□□ -0.16
PDX1P52945 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC14.08□□□□□ -0.16
PDX1P52945 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.08□□□□□ -0.16
PDX1P52945 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
PDX1P52945 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
PDX1P52945 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.08□□□□□ -0.16
PDX1P52945 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.07□□□□□ -0.16
PDX1P52945 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.07□□□□□ -0.16
PDX1P52945 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
PDX1P52945 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
PDX1P52945 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 AC015909.3-201ENST00000572855 1794 ntBASIC14.07□□□□□ -0.16
PDX1P52945 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 TMBIM7P-202ENST00000641474 1516 ntBASIC14.07□□□□□ -0.16
PDX1P52945 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
PDX1P52945 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC14.07□□□□□ -0.16
PDX1P52945 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 AL035414.1-201ENST00000451327 857 ntBASIC14.07□□□□□ -0.16
PDX1P52945 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 NDUFS6P1-201ENST00000485187 316 ntBASIC14.07□□□□□ -0.16
PDX1P52945 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC14.07□□□□□ -0.16
PDX1P52945 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC14.07□□□□□ -0.16
PDX1P52945 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC14.07□□□□□ -0.16
PDX1P52945 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC14.07□□□□□ -0.16
PDX1P52945 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC14.07□□□□□ -0.16
PDX1P52945 AC135983.4-201ENST00000564116 1262 ntBASIC14.07□□□□□ -0.16
PDX1P52945 PHBP15-201ENST00000574228 665 ntBASIC14.07□□□□□ -0.16
PDX1P52945 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC14.07□□□□□ -0.16
PDX1P52945 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC14.07□□□□□ -0.16
PDX1P52945 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC14.07□□□□□ -0.16
PDX1P52945 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.07□□□□□ -0.16
PDX1P52945 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.07□□□□□ -0.16
PDX1P52945 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC14.07□□□□□ -0.16
PDX1P52945 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.07□□□□□ -0.16
PDX1P52945 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
PDX1P52945 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
PDX1P52945 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
PDX1P52945 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.07□□□□□ -0.16
PDX1P52945 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
PDX1P52945 AC018629.1-201ENST00000623381 1736 ntBASIC14.07□□□□□ -0.16
PDX1P52945 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
PDX1P52945 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDX1P52945 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDX1P52945 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
PDX1P52945 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
PDX1P52945 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.06□□□□□ -0.16
PDX1P52945 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDX1P52945 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.06□□□□□ -0.16
PDX1P52945 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.06□□□□□ -0.16
PDX1P52945 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
PDX1P52945 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDX1P52945 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.06□□□□□ -0.16
PDX1P52945 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
PDX1P52945 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
PDX1P52945 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.06□□□□□ -0.16
PDX1P52945 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDX1P52945 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
PDX1P52945 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC14.06□□□□□ -0.16
PDX1P52945 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDX1P52945 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDX1P52945 AL355334.1-201ENST00000417713 215 ntBASIC14.06□□□□□ -0.16
PDX1P52945 DNAJB1P1-201ENST00000429417 1024 ntBASIC14.06□□□□□ -0.16
PDX1P52945 AC026320.2-201ENST00000434379 478 ntBASIC14.06□□□□□ -0.16
PDX1P52945 XBP1P1-201ENST00000436573 652 ntBASIC14.06□□□□□ -0.16
PDX1P52945 RN7SL8P-201ENST00000461771 266 ntBASIC14.06□□□□□ -0.16
PDX1P52945 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC14.06□□□□□ -0.16
PDX1P52945 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
PDX1P52945 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC14.06□□□□□ -0.16
PDX1P52945 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC14.06□□□□□ -0.16
PDX1P52945 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC14.06□□□□□ -0.16
PDX1P52945 AC007881.3-201ENST00000608897 607 ntBASIC14.06□□□□□ -0.16
PDX1P52945 WT1-AS_6.1-201ENST00000614919 121 ntBASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms