Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CIITAP33076 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.19■□□□□ 0.18
CIITAP33076 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CIITAP33076 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
CIITAP33076 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC16.19■□□□□ 0.18
CIITAP33076 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC16.19■□□□□ 0.18
CIITAP33076 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
CIITAP33076 AC027601.5-201ENST00000624065 2482 ntBASIC16.19■□□□□ 0.18
CIITAP33076 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CIITAP33076 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CIITAP33076 RPL13AP3-202ENST00000494676 1473 ntBASIC16.19■□□□□ 0.18
CIITAP33076 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
CIITAP33076 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CIITAP33076 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC16.19■□□□□ 0.18
CIITAP33076 PTPA-217ENST00000434095 870 ntTSL 2 BASIC16.19■□□□□ 0.18
CIITAP33076 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC16.19■□□□□ 0.18
CIITAP33076 RPSAP15-201ENST00000448168 861 ntBASIC16.19■□□□□ 0.18
CIITAP33076 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CIITAP33076 IMP3P2-201ENST00000489760 475 ntBASIC16.19■□□□□ 0.18
CIITAP33076 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.19■□□□□ 0.18
CIITAP33076 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC16.19■□□□□ 0.18
CIITAP33076 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CIITAP33076 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
CIITAP33076 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC16.19■□□□□ 0.18
CIITAP33076 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC16.19■□□□□ 0.18
CIITAP33076 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC16.19■□□□□ 0.18
CIITAP33076 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC16.19■□□□□ 0.18
CIITAP33076 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC16.19■□□□□ 0.18
CIITAP33076 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CIITAP33076 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CIITAP33076 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CIITAP33076 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CIITAP33076 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CIITAP33076 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CIITAP33076 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CIITAP33076 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CIITAP33076 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CIITAP33076 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CIITAP33076 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC16.19■□□□□ 0.18
CIITAP33076 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CIITAP33076 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CIITAP33076 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CIITAP33076 USP39-220ENST00000613444 2161 ntTSL 2 BASIC16.19■□□□□ 0.18
CIITAP33076 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CIITAP33076 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CIITAP33076 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CIITAP33076 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CIITAP33076 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC16.18■□□□□ 0.18
CIITAP33076 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC16.18■□□□□ 0.18
CIITAP33076 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CIITAP33076 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CIITAP33076 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 KRT17P5-201ENST00000332088 839 ntBASIC16.18■□□□□ 0.18
CIITAP33076 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 OR2K2-202ENST00000374428 1038 ntBASIC16.18■□□□□ 0.18
CIITAP33076 AC007274.2-201ENST00000421675 662 ntBASIC16.18■□□□□ 0.18
CIITAP33076 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC16.18■□□□□ 0.18
CIITAP33076 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC16.18■□□□□ 0.18
CIITAP33076 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC16.18■□□□□ 0.18
CIITAP33076 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC16.18■□□□□ 0.18
CIITAP33076 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC16.18■□□□□ 0.18
CIITAP33076 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC16.18■□□□□ 0.18
CIITAP33076 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC16.18■□□□□ 0.18
CIITAP33076 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC16.18■□□□□ 0.18
CIITAP33076 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 AC105129.2-201ENST00000559536 390 ntBASIC16.18■□□□□ 0.18
CIITAP33076 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CIITAP33076 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC16.18■□□□□ 0.18
CIITAP33076 NAT9-220ENST00000582870 896 ntTSL 5 BASIC16.18■□□□□ 0.18
CIITAP33076 AC106872.11-201ENST00000605838 421 ntBASIC16.18■□□□□ 0.18
CIITAP33076 PPA1-206ENST00000625364 644 ntTSL 5 BASIC16.18■□□□□ 0.18
CIITAP33076 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC16.18■□□□□ 0.18
CIITAP33076 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC16.18■□□□□ 0.18
CIITAP33076 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC16.18■□□□□ 0.18
CIITAP33076 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CIITAP33076 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.18■□□□□ 0.18
CIITAP33076 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CIITAP33076 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CIITAP33076 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CIITAP33076 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CIITAP33076 FAM90A2P-201ENST00000511144 1395 ntBASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms