Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC18.82■□□□□ 0.6
HOXC9P31274 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC18.82■□□□□ 0.6
HOXC9P31274 KRT18P46-201ENST00000435568 1279 ntBASIC18.82■□□□□ 0.6
HOXC9P31274 RN7SL582P-201ENST00000491078 279 ntBASIC18.82■□□□□ 0.6
HOXC9P31274 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC18.82■□□□□ 0.6
HOXC9P31274 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC9P31274 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC18.82■□□□□ 0.6
HOXC9P31274 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC18.82■□□□□ 0.6
HOXC9P31274 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
HOXC9P31274 AL031673.1-201ENST00000611460 466 ntBASIC18.82■□□□□ 0.6
HOXC9P31274 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC18.82■□□□□ 0.6
HOXC9P31274 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC18.82■□□□□ 0.6
HOXC9P31274 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXC9P31274 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
HOXC9P31274 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC9P31274 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
HOXC9P31274 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXC9P31274 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
HOXC9P31274 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC18.82■□□□□ 0.6
HOXC9P31274 AC117503.4-201ENST00000623229 1418 ntBASIC18.82■□□□□ 0.6
HOXC9P31274 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXC9P31274 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC9P31274 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
HOXC9P31274 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
HOXC9P31274 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
HOXC9P31274 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HOXC9P31274 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXC9P31274 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HOXC9P31274 HMGA1P1-201ENST00000415560 1062 ntBASIC18.81■□□□□ 0.6
HOXC9P31274 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXC9P31274 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC18.81■□□□□ 0.6
HOXC9P31274 KRT18P37-201ENST00000520711 1282 ntBASIC18.81■□□□□ 0.6
HOXC9P31274 BATF-202ENST00000555504 361 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXC9P31274 DNM1P51-201ENST00000558149 522 ntBASIC18.81■□□□□ 0.6
HOXC9P31274 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
HOXC9P31274 RN7SL596P-201ENST00000582123 288 ntBASIC18.81■□□□□ 0.6
HOXC9P31274 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 DBET-201ENST00000630918 3363 ntBASIC18.81■□□□□ 0.6
HOXC9P31274 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXC9P31274 HSPA8P5-201ENST00000456928 2069 ntBASIC18.81■□□□□ 0.6
HOXC9P31274 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC18.81■□□□□ 0.6
HOXC9P31274 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.81■□□□□ 0.6
HOXC9P31274 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
HOXC9P31274 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
HOXC9P31274 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC18.81■□□□□ 0.6
HOXC9P31274 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
HOXC9P31274 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HOXC9P31274 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC18.8■□□□□ 0.6
HOXC9P31274 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC18.8■□□□□ 0.6
HOXC9P31274 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC18.8■□□□□ 0.6
HOXC9P31274 AC012617.1-204ENST00000586340 2305 ntBASIC18.8■□□□□ 0.6
HOXC9P31274 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC9P31274 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC9P31274 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
HOXC9P31274 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC9P31274 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC9P31274 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC18.8■□□□□ 0.6
HOXC9P31274 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC9P31274 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC9P31274 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXC9P31274 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC9P31274 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC9P31274 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HOXC9P31274 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
HOXC9P31274 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC9P31274 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
HOXC9P31274 IDS-203ENST00000428056 1213 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXC9P31274 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC18.8■□□□□ 0.6
HOXC9P31274 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXC9P31274 AGPAT5P1-201ENST00000455855 1019 ntBASIC18.8■□□□□ 0.6
HOXC9P31274 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
HOXC9P31274 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXC9P31274 AC132825.4-202ENST00000578792 434 ntBASIC18.8■□□□□ 0.6
HOXC9P31274 AC008972.2-201ENST00000606587 494 ntBASIC18.8■□□□□ 0.6
HOXC9P31274 COQ4-204ENST00000608951 781 ntTSL 2 BASIC18.8■□□□□ 0.6
HOXC9P31274 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
HOXC9P31274 MIR6746-201ENST00000620971 63 ntBASIC18.8■□□□□ 0.6
HOXC9P31274 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC9P31274 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC9P31274 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC9P31274 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HOXC9P31274 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms