Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC112492.5-201ENST00000421897 457 ntBASIC11.11□□□□□ -0.63
HLA-DMBP28068 TMEM14DP-201ENST00000422205 345 ntBASIC11.11□□□□□ -0.63
HLA-DMBP28068 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 AC234783.1-201ENST00000441761 496 ntBASIC11.11□□□□□ -0.63
HLA-DMBP28068 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 TDH-203ENST00000531764 1110 ntBASIC11.11□□□□□ -0.63
HLA-DMBP28068 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 AC106886.1-201ENST00000568660 600 ntBASIC11.11□□□□□ -0.63
HLA-DMBP28068 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 IFT20-216ENST00000588477 774 ntTSL 5 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 APOC4-201ENST00000591600 348 ntTSL 3 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 AC008735.3-201ENST00000596646 500 ntBASIC11.11□□□□□ -0.63
HLA-DMBP28068 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 RPSAP52-203ENST00000622976 1023 ntBASIC11.11□□□□□ -0.63
HLA-DMBP28068 AP001002.3-201ENST00000623482 206 ntBASIC11.11□□□□□ -0.63
HLA-DMBP28068 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 AC023794.5-201ENST00000564380 2157 ntBASIC11.11□□□□□ -0.63
HLA-DMBP28068 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 DDC-213ENST00000617822 1809 ntTSL 3 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DMBP28068 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
HLA-DMBP28068 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 AGAP10P-201ENST00000454844 2418 ntBASIC11.1□□□□□ -0.63
HLA-DMBP28068 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 AC090643.2-201ENST00000623442 2029 ntBASIC11.1□□□□□ -0.63
HLA-DMBP28068 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 BAATP1-201ENST00000412284 1225 ntBASIC11.1□□□□□ -0.63
HLA-DMBP28068 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 KRT43P-201ENST00000434019 910 ntBASIC11.1□□□□□ -0.63
HLA-DMBP28068 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 ACA64.2-201ENST00000459014 129 ntBASIC11.1□□□□□ -0.63
HLA-DMBP28068 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 AC106760.1-201ENST00000508690 800 ntBASIC11.1□□□□□ -0.63
HLA-DMBP28068 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 AC009486.1-201ENST00000569860 813 ntBASIC11.1□□□□□ -0.63
HLA-DMBP28068 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 MIR6074-201ENST00000612054 107 ntBASIC11.1□□□□□ -0.63
HLA-DMBP28068 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC11.1□□□□□ -0.63
HLA-DMBP28068 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DMBP28068 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms