Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 ACTG1P2-201ENST00000415776 1125 ntBASIC14.58□□□□□ -0.08
DKK3Q9UBP4 ACTG1P11-201ENST00000425411 1125 ntBASIC14.58□□□□□ -0.08
DKK3Q9UBP4 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 Z97180.1-201ENST00000445173 988 ntBASIC14.58□□□□□ -0.08
DKK3Q9UBP4 TSACC-208ENST00000481479 741 ntTSL 2 BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 TPI1-206ENST00000488464 791 ntTSL 5 BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 AC090857.1-201ENST00000527400 390 ntBASIC14.58□□□□□ -0.08
DKK3Q9UBP4 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 AC104506.1-201ENST00000609247 429 ntBASIC14.58□□□□□ -0.08
DKK3Q9UBP4 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
DKK3Q9UBP4 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 ISCA2P1-201ENST00000425548 448 ntBASIC14.57□□□□□ -0.08
DKK3Q9UBP4 MSRA-203ENST00000441698 788 ntTSL 2 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 IGHJ2P-201ENST00000454480 60 ntBASIC14.57□□□□□ -0.08
DKK3Q9UBP4 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 AC021016.3-201ENST00000608367 477 ntBASIC14.57□□□□□ -0.08
DKK3Q9UBP4 AL591471.1-201ENST00000621855 229 ntBASIC14.57□□□□□ -0.08
DKK3Q9UBP4 AC090386.2-201ENST00000623010 1039 ntBASIC14.57□□□□□ -0.08
DKK3Q9UBP4 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 AC005840.4-201ENST00000541242 2494 ntBASIC14.57□□□□□ -0.08
DKK3Q9UBP4 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 STK26-204ENST00000481105 1835 ntTSL 2 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
DKK3Q9UBP4 AC073869.1-201ENST00000415574 2762 ntBASIC14.56□□□□□ -0.08
DKK3Q9UBP4 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.56□□□□□ -0.08
DKK3Q9UBP4 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.56□□□□□ -0.08
DKK3Q9UBP4 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
DKK3Q9UBP4 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
DKK3Q9UBP4 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
DKK3Q9UBP4 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
DKK3Q9UBP4 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC14.56□□□□□ -0.08
DKK3Q9UBP4 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
DKK3Q9UBP4 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.56□□□□□ -0.08
DKK3Q9UBP4 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
DKK3Q9UBP4 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
DKK3Q9UBP4 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC14.56□□□□□ -0.08
DKK3Q9UBP4 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
DKK3Q9UBP4 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms