Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 AC139712.1-201ENST00000378256 1875 ntBASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 KRT8P13-201ENST00000463294 1010 ntBASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 AL133338.1-201ENST00000565695 1517 ntBASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 AL021578.1-201ENST00000613646 709 ntBASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC17.34■□□□□ 0.37
CHMP4CQ96CF2 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC17.33■□□□□ 0.37
CHMP4CQ96CF2 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC17.33■□□□□ 0.37
CHMP4CQ96CF2 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHMP4CQ96CF2 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CHMP4CQ96CF2 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHMP4CQ96CF2 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHMP4CQ96CF2 USP3-204ENST00000540797 5474 ntTSL 2 BASIC17.33■□□□□ 0.37
CHMP4CQ96CF2 SHC1P1-201ENST00000425230 1745 ntBASIC17.33■□□□□ 0.37
CHMP4CQ96CF2 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHMP4CQ96CF2 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CHMP4CQ96CF2 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CHMP4CQ96CF2 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC17.33■□□□□ 0.37
CHMP4CQ96CF2 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHMP4CQ96CF2 F10-203ENST00000409306 1450 ntTSL 3 BASIC17.33■□□□□ 0.37
CHMP4CQ96CF2 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 AL354877.1-201ENST00000424412 413 ntBASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 EID1-202ENST00000560490 584 ntTSL 3 BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 AC100827.2-201ENST00000563214 1194 ntBASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 KC6-205ENST00000599934 556 ntTSL 4 BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 DMBT1P1-203ENST00000636837 4628 ntBASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 BEND3P1-201ENST00000421591 1944 ntBASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 RN7SL832P-201ENST00000607781 1756 ntBASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP4CQ96CF2 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 PUDPP3-201ENST00000445368 636 ntBASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 AC005077.2-201ENST00000449786 690 ntBASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC17.32■□□□□ 0.36
CHMP4CQ96CF2 NEU3-202ENST00000526068 431 ntTSL 2 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms