Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 NME6-203ENST00000415644 849 ntTSL 2 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 VDAC1P1-201ENST00000439229 848 ntBASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 SCARNA21-201ENST00000517026 139 ntBASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 AL160314.3-201ENST00000556041 767 ntBASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 AC013355.1-201ENST00000562625 723 ntBASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 AC009884.2-201ENST00000603110 324 ntBASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 AC090164.2-201ENST00000611487 516 ntBASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 AL139099.5-201ENST00000635274 300 ntBASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 TMBIM7P-202ENST00000641474 1516 ntBASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 ST20-AS1-201ENST00000560255 4223 ntBASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 FAS-202ENST00000352159 1722 ntTSL 5 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 BCYRN1-201ENST00000418539 200 ntBASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 CALR4P-201ENST00000431943 946 ntBASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 PTPA-215ENST00000432124 567 ntTSL 4 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 AC152010.1-201ENST00000415779 2006 ntBASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFWD3Q6PCD5 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFWD3Q6PCD5 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFWD3Q6PCD5 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RFWD3Q6PCD5 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFWD3Q6PCD5 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFWD3Q6PCD5 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.13■□□□□ 0.01
RFWD3Q6PCD5 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.13■□□□□ 0.01
RFWD3Q6PCD5 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFWD3Q6PCD5 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC15.13■□□□□ 0.01
RFWD3Q6PCD5 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms