Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC13.01□□□□□ -0.33
SCN1BQ07699 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
SCN1BQ07699 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
SCN1BQ07699 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC13.01□□□□□ -0.33
SCN1BQ07699 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC13.01□□□□□ -0.33
SCN1BQ07699 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC13.01□□□□□ -0.33
SCN1BQ07699 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC13.01□□□□□ -0.33
SCN1BQ07699 AC241585.1-201ENST00000433527 519 ntBASIC13.01□□□□□ -0.33
SCN1BQ07699 URGCP-206ENST00000446958 365 ntTSL 2 BASIC13.01□□□□□ -0.33
SCN1BQ07699 AL512638.1-201ENST00000457493 794 ntBASIC13.01□□□□□ -0.33
SCN1BQ07699 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC13.01□□□□□ -0.33
SCN1BQ07699 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC13.01□□□□□ -0.33
SCN1BQ07699 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.01□□□□□ -0.33
SCN1BQ07699 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC13.01□□□□□ -0.33
SCN1BQ07699 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC13.01□□□□□ -0.33
SCN1BQ07699 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC13.01□□□□□ -0.33
SCN1BQ07699 AL158211.3-201ENST00000607385 239 ntBASIC13.01□□□□□ -0.33
SCN1BQ07699 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC13.01□□□□□ -0.33
SCN1BQ07699 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC13.01□□□□□ -0.33
SCN1BQ07699 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC13.01□□□□□ -0.33
SCN1BQ07699 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC13.01□□□□□ -0.33
SCN1BQ07699 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 AC024075.2-201ENST00000598112 1473 ntBASIC13.01□□□□□ -0.33
SCN1BQ07699 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC13.01□□□□□ -0.33
SCN1BQ07699 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
SCN1BQ07699 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC13.01□□□□□ -0.33
SCN1BQ07699 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC13.01□□□□□ -0.33
SCN1BQ07699 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
SCN1BQ07699 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
SCN1BQ07699 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
SCN1BQ07699 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC13.01□□□□□ -0.33
SCN1BQ07699 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
SCN1BQ07699 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
SCN1BQ07699 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC13□□□□□ -0.33
SCN1BQ07699 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 NCLP1-201ENST00000445357 1963 ntBASIC13□□□□□ -0.33
SCN1BQ07699 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
SCN1BQ07699 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC13□□□□□ -0.33
SCN1BQ07699 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13□□□□□ -0.33
SCN1BQ07699 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC13□□□□□ -0.33
SCN1BQ07699 TOMM22P5-201ENST00000416399 439 ntBASIC13□□□□□ -0.33
SCN1BQ07699 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC13□□□□□ -0.33
SCN1BQ07699 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC13□□□□□ -0.33
SCN1BQ07699 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC13□□□□□ -0.33
SCN1BQ07699 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC13□□□□□ -0.33
SCN1BQ07699 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
SCN1BQ07699 SSH2-210ENST00000582084 560 ntTSL 3 BASIC13□□□□□ -0.33
SCN1BQ07699 AC139530.3-201ENST00000620344 690 ntBASIC13□□□□□ -0.33
SCN1BQ07699 AC004461.2-201ENST00000629517 803 ntBASIC13□□□□□ -0.33
SCN1BQ07699 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC13□□□□□ -0.33
SCN1BQ07699 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
SCN1BQ07699 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
SCN1BQ07699 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 GOLGA8IP-202ENST00000611635 2100 ntBASIC13□□□□□ -0.33
SCN1BQ07699 HLCS-201ENST00000336648 6010 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SCN1BQ07699 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13□□□□□ -0.33
SCN1BQ07699 AC106818.1-201ENST00000623223 3242 ntBASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms