Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.52
LMO4P61968 HPD-204ENST00000543163 1709 ntTSL 5 BASIC11.77□□□□□ -0.52
LMO4P61968 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
LMO4P61968 RPL13AP3-202ENST00000494676 1473 ntBASIC11.77□□□□□ -0.52
LMO4P61968 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
LMO4P61968 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
LMO4P61968 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
LMO4P61968 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
LMO4P61968 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
LMO4P61968 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
LMO4P61968 INTS4P1-203ENST00000641008 3683 ntBASIC11.77□□□□□ -0.53
LMO4P61968 DBET-201ENST00000630918 3363 ntBASIC11.77□□□□□ -0.53
LMO4P61968 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC11.77□□□□□ -0.53
LMO4P61968 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 PYY2-201ENST00000315776 282 ntBASIC11.77□□□□□ -0.53
LMO4P61968 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
LMO4P61968 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
LMO4P61968 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC11.77□□□□□ -0.53
LMO4P61968 DPY19L2P5-201ENST00000456300 331 ntBASIC11.77□□□□□ -0.53
LMO4P61968 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 SCARNA12-201ENST00000459155 270 ntBASIC11.77□□□□□ -0.53
LMO4P61968 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC11.77□□□□□ -0.53
LMO4P61968 CHCHD2P2-201ENST00000503744 321 ntBASIC11.77□□□□□ -0.53
LMO4P61968 AC095040.1-201ENST00000513286 675 ntBASIC11.77□□□□□ -0.53
LMO4P61968 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC11.77□□□□□ -0.53
LMO4P61968 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC11.77□□□□□ -0.53
LMO4P61968 CR383656.3-201ENST00000551315 183 ntBASIC11.77□□□□□ -0.53
LMO4P61968 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
LMO4P61968 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
LMO4P61968 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC11.77□□□□□ -0.53
LMO4P61968 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 MYB-201ENST00000316528 3571 ntTSL 5 BASIC11.77□□□□□ -0.53
LMO4P61968 MYB-241ENST00000616088 3573 ntTSL 5 BASIC11.77□□□□□ -0.53
LMO4P61968 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC11.77□□□□□ -0.53
LMO4P61968 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC11.77□□□□□ -0.53
LMO4P61968 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
LMO4P61968 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC11.77□□□□□ -0.53
LMO4P61968 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 TSPY26P-202ENST00000565928 3884 ntBASIC11.77□□□□□ -0.53
LMO4P61968 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
LMO4P61968 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC11.77□□□□□ -0.53
LMO4P61968 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC11.77□□□□□ -0.53
LMO4P61968 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LMO4P61968 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC11.77□□□□□ -0.53
LMO4P61968 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
LMO4P61968 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
LMO4P61968 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC11.76□□□□□ -0.53
LMO4P61968 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC11.76□□□□□ -0.53
LMO4P61968 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC11.76□□□□□ -0.53
LMO4P61968 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC11.76□□□□□ -0.53
LMO4P61968 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC11.76□□□□□ -0.53
LMO4P61968 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC11.76□□□□□ -0.53
LMO4P61968 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC11.76□□□□□ -0.53
LMO4P61968 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
LMO4P61968 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC11.76□□□□□ -0.53
LMO4P61968 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 AC103592.1-201ENST00000394513 664 ntBASIC11.76□□□□□ -0.53
LMO4P61968 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC11.76□□□□□ -0.53
LMO4P61968 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC11.76□□□□□ -0.53
LMO4P61968 LINC00265-2P-201ENST00000413372 782 ntBASIC11.76□□□□□ -0.53
LMO4P61968 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC11.76□□□□□ -0.53
LMO4P61968 AC012362.1-201ENST00000434906 739 ntBASIC11.76□□□□□ -0.53
LMO4P61968 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC11.76□□□□□ -0.53
LMO4P61968 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC11.76□□□□□ -0.53
LMO4P61968 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC11.76□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms