Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 TUBB1P2-201ENST00000422712 1306 ntBASIC15.17■□□□□ 0.02
HDAC4P56524 TUBB1P1-201ENST00000503144 1300 ntBASIC15.17■□□□□ 0.02
HDAC4P56524 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC4P56524 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
HDAC4P56524 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HDAC4P56524 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC15.16■□□□□ 0.02
HDAC4P56524 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC15.16■□□□□ 0.02
HDAC4P56524 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC15.16■□□□□ 0.02
HDAC4P56524 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 MIR663B-201ENST00000408361 115 ntBASIC15.16■□□□□ 0.02
HDAC4P56524 FAM58BP-201ENST00000439056 645 ntBASIC15.16■□□□□ 0.02
HDAC4P56524 AC012441.2-201ENST00000444843 739 ntBASIC15.16■□□□□ 0.02
HDAC4P56524 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC4P56524 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC15.16■□□□□ 0.02
HDAC4P56524 RBM8B-201ENST00000555532 525 ntBASIC15.16■□□□□ 0.02
HDAC4P56524 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC4P56524 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.16■□□□□ 0.02
HDAC4P56524 AC005962.1-201ENST00000584100 773 ntBASIC15.16■□□□□ 0.02
HDAC4P56524 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
HDAC4P56524 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC4P56524 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC4P56524 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.16■□□□□ 0.02
HDAC4P56524 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC15.16■□□□□ 0.02
HDAC4P56524 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC15.16■□□□□ 0.02
HDAC4P56524 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HDAC4P56524 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC15.15■□□□□ 0.02
HDAC4P56524 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC15.15■□□□□ 0.02
HDAC4P56524 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.15■□□□□ 0.02
HDAC4P56524 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC15.15■□□□□ 0.02
HDAC4P56524 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC15.15■□□□□ 0.02
HDAC4P56524 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC15.15■□□□□ 0.02
HDAC4P56524 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC15.15■□□□□ 0.02
HDAC4P56524 BTBD6P1-201ENST00000412176 1267 ntBASIC15.15■□□□□ 0.02
HDAC4P56524 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC15.15■□□□□ 0.02
HDAC4P56524 RPS2P32-201ENST00000439199 892 ntBASIC15.15■□□□□ 0.02
HDAC4P56524 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
HDAC4P56524 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC15.15■□□□□ 0.02
HDAC4P56524 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC15.15■□□□□ 0.02
HDAC4P56524 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC15.15■□□□□ 0.02
HDAC4P56524 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC15.15■□□□□ 0.02
HDAC4P56524 CD74-212ENST00000524315 584 ntTSL 5 BASIC15.15■□□□□ 0.02
HDAC4P56524 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC15.15■□□□□ 0.02
HDAC4P56524 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC15.15■□□□□ 0.02
HDAC4P56524 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC15.15■□□□□ 0.02
HDAC4P56524 AL359881.2-201ENST00000602973 570 ntBASIC15.15■□□□□ 0.02
HDAC4P56524 AC005695.3-201ENST00000614522 232 ntBASIC15.15■□□□□ 0.02
HDAC4P56524 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
HDAC4P56524 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 RPL35-206ENST00000629845 340 ntTSL 5 BASIC15.15■□□□□ 0.02
HDAC4P56524 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
HDAC4P56524 AC005252.3-201ENST00000623855 2258 ntBASIC15.15■□□□□ 0.02
HDAC4P56524 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
HDAC4P56524 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC15.15■□□□□ 0.02
HDAC4P56524 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
HDAC4P56524 CYP4F23P-201ENST00000593402 1579 ntBASIC15.15■□□□□ 0.02
HDAC4P56524 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HDAC4P56524 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.15■□□□□ 0.02
HDAC4P56524 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms