Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC13.73□□□□□ -0.21
SOX3P41225 AL358472.3-201ENST00000608147 415 ntBASIC13.73□□□□□ -0.21
SOX3P41225 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC13.73□□□□□ -0.21
SOX3P41225 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
SOX3P41225 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC13.73□□□□□ -0.21
SOX3P41225 LSS-211ENST00000522411 2523 ntTSL 2 BASIC13.73□□□□□ -0.21
SOX3P41225 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.73□□□□□ -0.21
SOX3P41225 AL359183.1-201ENST00000623796 2132 ntBASIC13.73□□□□□ -0.21
SOX3P41225 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SOX3P41225 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.73□□□□□ -0.21
SOX3P41225 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.72□□□□□ -0.21
SOX3P41225 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC13.72□□□□□ -0.21
SOX3P41225 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
SOX3P41225 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
SOX3P41225 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.72□□□□□ -0.21
SOX3P41225 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.72□□□□□ -0.21
SOX3P41225 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
SOX3P41225 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC13.72□□□□□ -0.21
SOX3P41225 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC13.72□□□□□ -0.21
SOX3P41225 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
SOX3P41225 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.72□□□□□ -0.21
SOX3P41225 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.72□□□□□ -0.21
SOX3P41225 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC13.72□□□□□ -0.21
SOX3P41225 AC243960.2-201ENST00000600996 747 ntBASIC13.72□□□□□ -0.21
SOX3P41225 AL118558.3-201ENST00000607414 1079 ntBASIC13.72□□□□□ -0.21
SOX3P41225 AL136301.1-201ENST00000615830 422 ntBASIC13.72□□□□□ -0.21
SOX3P41225 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 API5-203ENST00000455725 2257 ntTSL 2 BASIC13.72□□□□□ -0.21
SOX3P41225 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
SOX3P41225 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
SOX3P41225 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
SOX3P41225 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
SOX3P41225 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC13.72□□□□□ -0.21
SOX3P41225 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
SOX3P41225 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SOX3P41225 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC13.71□□□□□ -0.21
SOX3P41225 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SOX3P41225 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC13.71□□□□□ -0.21
SOX3P41225 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX3P41225 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC13.71□□□□□ -0.21
SOX3P41225 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX3P41225 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
SOX3P41225 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
SOX3P41225 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX3P41225 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SOX3P41225 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX3P41225 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.71□□□□□ -0.21
SOX3P41225 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX3P41225 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SOX3P41225 MIR663B-201ENST00000408361 115 ntBASIC13.71□□□□□ -0.21
SOX3P41225 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
SOX3P41225 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC13.71□□□□□ -0.21
SOX3P41225 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX3P41225 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX3P41225 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.71□□□□□ -0.21
SOX3P41225 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC13.71□□□□□ -0.21
SOX3P41225 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC13.71□□□□□ -0.21
SOX3P41225 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SOX3P41225 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC13.71□□□□□ -0.21
SOX3P41225 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SOX3P41225 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX3P41225 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
SOX3P41225 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.71□□□□□ -0.21
SOX3P41225 GALC-206ENST00000544807 2528 ntTSL 2 BASIC13.71□□□□□ -0.21
SOX3P41225 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX3P41225 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SOX3P41225 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC13.71□□□□□ -0.21
SOX3P41225 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC13.71□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms