Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 FXNP2-201ENST00000411625 547 ntBASIC13.33□□□□□ -0.28
MSX1P28360 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC13.33□□□□□ -0.28
MSX1P28360 AC245884.6-201ENST00000515672 1067 ntBASIC13.33□□□□□ -0.28
MSX1P28360 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC13.33□□□□□ -0.28
MSX1P28360 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC13.33□□□□□ -0.28
MSX1P28360 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC13.33□□□□□ -0.28
MSX1P28360 AC121493.1-201ENST00000602316 450 ntBASIC13.33□□□□□ -0.28
MSX1P28360 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC13.33□□□□□ -0.28
MSX1P28360 AP001505.2-201ENST00000616815 443 ntBASIC13.33□□□□□ -0.28
MSX1P28360 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.33□□□□□ -0.28
MSX1P28360 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
MSX1P28360 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
MSX1P28360 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC13.33□□□□□ -0.28
MSX1P28360 AL008718.2-201ENST00000609206 1313 ntBASIC13.33□□□□□ -0.28
MSX1P28360 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
MSX1P28360 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
MSX1P28360 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
MSX1P28360 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
MSX1P28360 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
MSX1P28360 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC13.32□□□□□ -0.28
MSX1P28360 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC13.32□□□□□ -0.28
MSX1P28360 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.32□□□□□ -0.28
MSX1P28360 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
MSX1P28360 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
MSX1P28360 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.32□□□□□ -0.28
MSX1P28360 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
MSX1P28360 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
MSX1P28360 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC13.32□□□□□ -0.28
MSX1P28360 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC13.32□□□□□ -0.28
MSX1P28360 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
MSX1P28360 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC13.32□□□□□ -0.28
MSX1P28360 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 AL133466.1-201ENST00000447582 150 ntBASIC13.32□□□□□ -0.28
MSX1P28360 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 RN7SL720P-201ENST00000488178 304 ntBASIC13.32□□□□□ -0.28
MSX1P28360 IMP3P2-201ENST00000489760 475 ntBASIC13.32□□□□□ -0.28
MSX1P28360 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC13.32□□□□□ -0.28
MSX1P28360 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13.32□□□□□ -0.28
MSX1P28360 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC13.32□□□□□ -0.28
MSX1P28360 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC13.32□□□□□ -0.28
MSX1P28360 AP000346.4-201ENST00000614827 381 ntBASIC13.32□□□□□ -0.28
MSX1P28360 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC13.32□□□□□ -0.28
MSX1P28360 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.32□□□□□ -0.28
MSX1P28360 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC13.32□□□□□ -0.28
MSX1P28360 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
MSX1P28360 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
MSX1P28360 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.32□□□□□ -0.28
MSX1P28360 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
MSX1P28360 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.32□□□□□ -0.28
MSX1P28360 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC13.32□□□□□ -0.28
MSX1P28360 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC13.32□□□□□ -0.28
MSX1P28360 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
MSX1P28360 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13.32□□□□□ -0.28
MSX1P28360 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.32□□□□□ -0.28
MSX1P28360 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
MSX1P28360 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MSX1P28360 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.32□□□□□ -0.28
MSX1P28360 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.32□□□□□ -0.28
MSX1P28360 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.31□□□□□ -0.28
MSX1P28360 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
MSX1P28360 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms